| Age | Commit message (Expand) | Author |
|---|
| 2014-03-31 | This closes bug #19. adds variables into the scoring header for later reference | Calvin Morrison |
| 2014-03-31 | Add feature to have a top-scores file. closes issue #21 | Calvin Morrison |
| 2014-03-27 | Scoring all mer combinations from a file with a -m | Calvin Morrison |
| 2014-03-27 | improve output, add number of primers in first colum. this closes #12 | Calvin Morrison |
| 2014-03-27 | move stuff around | Calvin Morrison |
| 2014-03-27 | Add scoring for specific combinations. | Calvin Morrison |
| 2014-03-26 | majorly rewrite and revamp the script to support runnign parts at a time | Calvin Morrison |
| 2014-03-26 | add primer_weight to our score function | Calvin Morrison |
| 2014-03-26 | use float | Calvin Morrison |
| 2014-03-25 | Score mer statistics. This closes #6 | Calvin Morrison |
| 2014-03-25 | update selectivity equation, and update readme | Calvin Morrison |
| 2014-03-25 | add average binding filter | Calvin Morrison |
| 2014-03-25 | don't populate, use the bg conts from selectivity | Calvin Morrison |
| 2014-03-25 | update header | Calvin Morrison |
| 2014-03-25 | fix len | Calvin Morrison |
| 2014-03-25 | working upscore_wrapper.sh | Calvin Morrison |
| 2014-03-25 | formatting changes, pylint up in this b**** | Calvin Morrison |
| 2014-03-25 | remove stray ; | Calvin Morrison |
| 2014-03-25 | start to add debug variable to score_mers | Calvin Morrison |
| 2014-03-25 | Update scoring function. | Calvin Morrison |
| 2014-03-24 | add non-functioning score wrapper | Calvin Morrison |
| 2014-03-24 | Major Updates: | Calvin Morrison |
| 2014-03-24 | use biopython's temperature calculator... slow as dirt | Calvin Morrison |
| 2014-03-24 | fix strstream to work with mers list | Calvin Morrison |
| 2014-03-23 | add mer list reading to strstream | Calvin Morrison |
| 2014-03-21 | add end of sequences in as points in our array | Calvin Morrison |
| 2014-03-21 | fix warning | Calvin Morrison |
| 2014-03-21 | add sequence length command | Calvin Morrison |
| 2014-03-19 | add output also to scores file | Calvin Morrison |
| 2014-03-18 | update scoring equation | Calvin Morrison |
| 2014-03-13 | whistpace and 1 | Calvin Morrison |
| 2014-03-13 | Refactoring, features, rage! | Calvin Morrison |
| 2014-03-13 | add coutning points for reverses | Calvin Morrison |
| 2014-03-13 | add comments, add workflow explaination, move pop_{fg,bg} fns | Calvin Morrison |
| 2014-03-13 | refactor binding layout, add comments | Calvin Morrison |
| 2014-03-06 | use kmer_continuous_count instead of kmer_total_count, remove tmp file, updat... | Calvin Morrison |
| 2014-03-05 | should work: | Calvin Morrison |
| 2014-03-05 | more verbose score output | Calvin Morrison |
| 2014-03-03 | update defaults and align variable names with global env variables | Calvin Morrison |
| 2014-03-03 | add load_heterodimer_dic function | Calvin Morrison |
| 2014-03-03 | check heterodimer dic first because it's likely to be the #1 cause of issues | Calvin Morrison |
| 2014-03-03 | add check to see if results are even possible, and use gzip out | Calvin Morrison |
| 2014-03-03 | update arguemnts, make {fg,bg}_genome_length global | Calvin Morrison |
| 2014-03-03 | update parameters file | Calvin Morrison |
| 2014-02-05 | use a ifilter outside | Calvin Morrison |
| 2014-02-04 | seperate out scoring stuff into our iterator as a filter | Calvin Morrison |
| 2014-02-04 | add check functions to filter without calling the jobs | Calvin Morrison |
| 2014-02-04 | max_consecutive speed up | Calvin Morrison |
| 2014-01-30 | update score mers with hererodimers | Calvin Morrison |
| 2014-01-29 | fix warning | Calvin Morrison |
