diff options
| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-26 21:05:25 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-26 21:05:25 -0400 |
| commit | 495228f7167a6df24a139022e7a0560a4dd07b56 (patch) | |
| tree | ca163ce70968410ebbe30291c2c90aaec92da9b1 /src | |
| parent | f6fe059e37d8e8ee0cb6f7acf72c8918473ad3f7 (diff) | |
majorly rewrite and revamp the script to support runnign parts at a time
Diffstat (limited to 'src')
| -rwxr-xr-x | src/score_mers.py | 2 | ||||
| -rwxr-xr-x | src/score_wrapper.sh | 4 |
2 files changed, 2 insertions, 4 deletions
diff --git a/src/score_mers.py b/src/score_mers.py index 07d2ff9..aaf8e13 100755 --- a/src/score_mers.py +++ b/src/score_mers.py @@ -197,7 +197,7 @@ def score_mers(selected): print "" print "Reasons mers were excluded:\n" print " max distance: " + percentage(excluded[0], total_reject) + " (" + str(excluded[0]) + ")" - print " max_overlaps: " + percentage(excluded[1], total_reject) + " (" + str(excluded[1]) + ")" + print " mers overlap: " + percentage(excluded[1], total_reject) + " (" + str(excluded[1]) + ")" print " heterodimers: " + percentage(excluded[2], total_reject) + " (" + str(excluded[2]) + ")" print "" print " total combinations checked: ", total_checked diff --git a/src/score_wrapper.sh b/src/score_wrapper.sh index 4e1a6bd..1c6f856 100755 --- a/src/score_wrapper.sh +++ b/src/score_wrapper.sh @@ -5,13 +5,11 @@ function clean_exit { echo -e "\nInterrupt caught. Exiting cleanly..." echo "killing $pid" kill -11 $pid - sleep 1 + sleep .5 exit } trap clean_exit SIGINT - -echo "score_mers.py $1 $2 $3 $4 &" score_mers.py $1 $2 $3 $4 & </dev/null pid=$! |