quikr.git - Quikr - a bio classifier based on NNLS

Age	Commit message (Collapse)	Author
2014-09-09	add the inference to quikr.c	Calvin Morrison

2014-09-09	allow for kmer inference and fix memory leak in get_fasta_files_from_file	Calvin Morrison

2014-03-24	update documentation	Calvin Morrison

2014-03-19	re-organize quikr.c to match multifasta a bit more	Calvin Morrison

2014-03-19	seperate function for getting a rare value	Calvin Morrison

2014-03-19	formatting fixes	Calvin Morrison

2014-03-09	quikr too	Calvin Morrison

2014-03-04	fix all warnings and that weird bug	Calvin Morrison

2013-11-26	working single threaded multifasta with rarity	Calvin Morrison

2013-11-07	remove debugging	Calvin Morrison

2013-11-07	update to work with kmer rarity	Calvin Morrison

2013-10-31	fix variable	Calvin Morrison

2013-10-31	remove all references to sensing-fasta	Calvin Morrison

2013-10-31	finish up removing OCaml Code and general code refactoring	Calvin Morrison

2013-10-31	formatting changes for quikr	Calvin Morrison

2013-10-29	update types and check malloc	Calvin Morrison

2013-10-29	update quikr to work with internally parsed sensing matrix	Calvin Morrison

2013-10-18	add kmercounting code from dna-utils. update our make file to support ↵	Calvin Morrison
	debugging, and update quikr to count-kmer code internally
2013-09-05	last fixes for 1.0.4v1.0.4	Calvin Morrison

2013-09-05	Remove debugging version	Calvin Morrison
	remove the debugging option for quikr, since there is not a reason to keep it anymore, consider it cruft. Our users are unlikely to ever use it and the same for us - remove from manpage - remove from quikr.c
2013-08-29	parse -h and --help and print out the help message	Calvin Morrison

2013-08-16	remove unused case	Calvin Morrison

2013-06-12	add --version and -V	Calvin

2013-06-11	use longs instead of ints, fix a mistake in the --help	Calvin

2013-06-07	updated help text and manpages	Calvin

2013-05-20	updated documentation strings, add man page to be installed globally	Calvin

2013-05-15	add some error checking	Calvin

2013-05-15	cleanup kmer/lambda default values	Calvin

2013-05-15	add -d flag for debugging so verbose doesn't take longer, use generate_kmers ↵	Calvin
	instead of a hacky awk
2013-05-14	release1.0	Calvin