working sparse implementation

1 files changed, 5 insertions, 3 deletions

diff --git a/Makefile b/Makefile
index c929cfd..e51a508 100644
--- a/Makefile
+++ b/Makefile
@@ -1,17 +1,19 @@
 VERSION=\"0.0.2\"
 CC = gcc
-CFLAGS = -O3 -s -mtune=native -Wall -DVERSION=$(VERSION) -Wextra
+CFLAGS = -O3 -s -mtune=native -Wall -DVERSION=$(VERSION) -Wextra -lcsparse
 DESTDIR = /usr/local/
 
 
 all: libkmer.o libkmer.so kmer_total_count kmer_counts_per_sequence
 
+sparse.o: sparse.c
+	$(CC) -c sparse.c -o sparse.o $(CFLAGS) 
 libkmer.o: kmer_utils.c
 	$(CC) -c kmer_utils.c -o libkmer.o $(CFLAGS) -fPIC
 libkmer.so: libkmer.o
 	$(CC) kmer_utils.c -o libkmer.so $(CFLAGS) -shared -fPIC
-kmer_total_count: libkmer.o kmer_total_count.c kmer_utils.h
-	$(CC) libkmer.o kmer_total_count.c -o kmer_total_count $(CLIBS) $(CFLAGS)
+kmer_total_count: sparse.o libkmer.o kmer_total_count.c kmer_utils.h
+	$(CC) sparse.o libkmer.o kmer_total_count.c -o kmer_total_count $(CLIBS) $(CFLAGS)
 kmer_counts_per_sequence: libkmer.o kmer_counts_per_sequence.c kmer_utils.h
 	$(CC) libkmer.o kmer_counts_per_sequence.c -o kmer_counts_per_sequence $(CLIBS) $(CFLAGS)