From 719c45d9ea49f33f087db899737ad5af4fc4414f Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Tue, 18 Feb 2014 12:42:11 -0500 Subject: working sparse implementation --- Makefile | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) (limited to 'Makefile') diff --git a/Makefile b/Makefile index c929cfd..e51a508 100644 --- a/Makefile +++ b/Makefile @@ -1,17 +1,19 @@ VERSION=\"0.0.2\" CC = gcc -CFLAGS = -O3 -s -mtune=native -Wall -DVERSION=$(VERSION) -Wextra +CFLAGS = -O3 -s -mtune=native -Wall -DVERSION=$(VERSION) -Wextra -lcsparse DESTDIR = /usr/local/ all: libkmer.o libkmer.so kmer_total_count kmer_counts_per_sequence +sparse.o: sparse.c + $(CC) -c sparse.c -o sparse.o $(CFLAGS) libkmer.o: kmer_utils.c $(CC) -c kmer_utils.c -o libkmer.o $(CFLAGS) -fPIC libkmer.so: libkmer.o $(CC) kmer_utils.c -o libkmer.so $(CFLAGS) -shared -fPIC -kmer_total_count: libkmer.o kmer_total_count.c kmer_utils.h - $(CC) libkmer.o kmer_total_count.c -o kmer_total_count $(CLIBS) $(CFLAGS) +kmer_total_count: sparse.o libkmer.o kmer_total_count.c kmer_utils.h + $(CC) sparse.o libkmer.o kmer_total_count.c -o kmer_total_count $(CLIBS) $(CFLAGS) kmer_counts_per_sequence: libkmer.o kmer_counts_per_sequence.c kmer_utils.h $(CC) libkmer.o kmer_counts_per_sequence.c -o kmer_counts_per_sequence $(CLIBS) $(CFLAGS) -- cgit v1.2.3