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-rw-r--r--Makefile8
1 files changed, 5 insertions, 3 deletions
diff --git a/Makefile b/Makefile
index c929cfd..e51a508 100644
--- a/Makefile
+++ b/Makefile
@@ -1,17 +1,19 @@
VERSION=\"0.0.2\"
CC = gcc
-CFLAGS = -O3 -s -mtune=native -Wall -DVERSION=$(VERSION) -Wextra
+CFLAGS = -O3 -s -mtune=native -Wall -DVERSION=$(VERSION) -Wextra -lcsparse
DESTDIR = /usr/local/
all: libkmer.o libkmer.so kmer_total_count kmer_counts_per_sequence
+sparse.o: sparse.c
+ $(CC) -c sparse.c -o sparse.o $(CFLAGS)
libkmer.o: kmer_utils.c
$(CC) -c kmer_utils.c -o libkmer.o $(CFLAGS) -fPIC
libkmer.so: libkmer.o
$(CC) kmer_utils.c -o libkmer.so $(CFLAGS) -shared -fPIC
-kmer_total_count: libkmer.o kmer_total_count.c kmer_utils.h
- $(CC) libkmer.o kmer_total_count.c -o kmer_total_count $(CLIBS) $(CFLAGS)
+kmer_total_count: sparse.o libkmer.o kmer_total_count.c kmer_utils.h
+ $(CC) sparse.o libkmer.o kmer_total_count.c -o kmer_total_count $(CLIBS) $(CFLAGS)
kmer_counts_per_sequence: libkmer.o kmer_counts_per_sequence.c kmer_utils.h
$(CC) libkmer.o kmer_counts_per_sequence.c -o kmer_counts_per_sequence $(CLIBS) $(CFLAGS)