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SelectiveWholeGenomeAmplification.git
master
Parameterized sweeps of FASTA files to help locate useful primers. Work done for Penn bio research guys
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Author
2014-04-07
wait on exit
Calvin Morrison
2014-04-03
fix min in README
Calvin Morrison
2014-04-03
add scoring to paramters
Calvin Morrison
2014-04-02
use min
Calvin Morrison
2014-04-02
add exit codes
Calvin Morrison
2014-04-02
add sort_by support for top-scores
Calvin Morrison
2014-04-02
move some table stuff, add sortby param
Calvin Morrison
2014-04-02
add description blurb, this closes #16
Calvin Morrison
2014-04-01
remove a debug line
Calvin Morrison
2014-04-01
add section for rescoring
Calvin Morrison
2014-04-01
add feature to read from previously scored all-scores file, clean up code as ...
Calvin Morrison
2014-04-01
check exit status and more error checking in check_feasilbe
Calvin Morrison
2014-03-31
update folder name
Calvin Morrison
2014-03-31
add filter documenation to readme
Calvin Morrison
2014-03-31
fix bug in using combination file. this closes #18
Calvin Morrison
2014-03-31
clean up readme
Calvin Morrison
2014-03-31
update output tree
Calvin Morrison
2014-03-31
fix header
Calvin Morrison
2014-03-31
add UI for scorign func, update doc and varaibles
Calvin Morrison
2014-03-31
add scorign to header and paramters and such
Calvin Morrison
2014-03-31
update README.md for custom scoring
Calvin Morrison
2014-03-31
add custom scoring
Calvin Morrison
2014-03-31
proper sizes with custom mers
Calvin Morrison
2014-03-31
This closes bug #19. adds variables into the scoring header for later reference
Calvin Morrison
2014-03-31
fix
Calvin Morrison
2014-03-31
fix sort
Calvin Morrison
2014-03-31
Add feature to have a top-scores file. closes issue #21
Calvin Morrison
2014-03-28
Update README.md
Calvin Morrison
2014-03-28
Update README.md
Calvin Morrison
2014-03-28
fix links and headers
Calvin Morrison
2014-03-28
Add headers, move stuff, toc
Calvin Morrison
2014-03-28
Spelling fixes in documentation
Calvin Morrison
2014-03-28
update selected_mers.py portion
Calvin Morrison
2014-03-28
add a newline
Calvin Morrison
2014-03-28
add docs
Calvin Morrison
2014-03-27
more documentation
Calvin Morrison
2014-03-27
add docs for commit all combinations
Calvin Morrison
2014-03-27
Scoring all mer combinations from a file with a -m
Calvin Morrison
2014-03-27
add doc for ignore all from file
Calvin Morrison
2014-03-27
Add support for ignoring all mers. and more
Calvin Morrison
2014-03-27
add ability to ignore all mers from a file
Calvin Morrison
2014-03-27
improve output, add number of primers in first colum. this closes #12
Calvin Morrison
2014-03-27
move stuff around
Calvin Morrison
2014-03-27
Add scoring for specific combinations.
Calvin Morrison
2014-03-26
majorly rewrite and revamp the script to support runnign parts at a time
Calvin Morrison
2014-03-26
add primer_weight to our score function
Calvin Morrison
2014-03-26
use float
Calvin Morrison
2014-03-25
Score mer statistics. This closes #6
Calvin Morrison
2014-03-25
fix table
Calvin Morrison
2014-03-25
add fg_weight to SelectiveGenomeAmplificationUI
Calvin Morrison
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