add average binding filter

1 files changed, 1 insertions, 1 deletions

diff --git a/README.md b/README.md
index f7477eb..5163087 100644
--- a/README.md
+++ b/README.md
@@ -41,7 +41,7 @@ Y | counts\_directory | $output\_directory/.tmp | directory for counts directory
 Y | tmp\_directory=$output\_directory/.tmp | temporary files directory
 Y | max\_melting\_temp | 30° | maximum melting temp of mers
 Y | min\_melting\_temp | 0° | minimum melting temp of mers
-Y | min\_mer\_count | Not Enabled (0) | only select mers that occur more frequently than this number
+Y | min\_foreground\_binding\_average | 50000 | elminate mers that appear less frequently than the average  (length of foreground / # of occurances)
 Y | max\_select | 15 | maximum number of mers to pick
 Y | max\_check | 35  | maximum number of mers to select (check the top #)
 Y | ignore\_mers | Not Enabled | mers to explicitly ignore, space seperated ex. ignore\_mers="ACAGTA ACCATAA ATATATAT"