From 06fa848b90982ddcd4308bb88d70a0d5f11f785b Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Tue, 25 Mar 2014 16:33:36 -0400 Subject: add average binding filter --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'README.md') diff --git a/README.md b/README.md index f7477eb..5163087 100644 --- a/README.md +++ b/README.md @@ -41,7 +41,7 @@ Y | counts\_directory | $output\_directory/.tmp | directory for counts directory Y | tmp\_directory=$output\_directory/.tmp | temporary files directory Y | max\_melting\_temp | 30° | maximum melting temp of mers Y | min\_melting\_temp | 0° | minimum melting temp of mers -Y | min\_mer\_count | Not Enabled (0) | only select mers that occur more frequently than this number +Y | min\_foreground\_binding\_average | 50000 | elminate mers that appear less frequently than the average (length of foreground / # of occurances) Y | max\_select | 15 | maximum number of mers to pick Y | max\_check | 35 | maximum number of mers to select (check the top #) Y | ignore\_mers | Not Enabled | mers to explicitly ignore, space seperated ex. ignore\_mers="ACAGTA ACCATAA ATATATAT" -- cgit v1.2.1