quikr.git - Quikr - a bio classifier based on NNLS

Age	Commit message (Collapse)	Author
2013-03-08	moving some stuff	Calvin

2013-03-08	convert into a module, rename out functions so all quikr functions are ↵	mutantturkey
	withing quikr.function name
2013-03-07	starting to modularize	Calvin

2013-03-07	multifasta_to_otu.py support for compression	Calvin

2013-03-07	added gzip compression support	Calvin

2013-03-06	removed debugging statements	Calvin

2013-03-06	do the matrix rotations and manipulations in quikr_train instead of quikr	Calvin

2013-02-28	use the load from file instead of calling it directly, should work now.	Calvin

2013-02-27	Update multifasta_to_otu.py for new quikr function	Calvin
	* Removed an old comment from the quikr function * Load the trained matrix from multifasta main. * This will reduce load times as we only need to call it once
2013-02-27	* add helper quikr_load_trained_from_file to load file	Calvin
	* change quikr to load a numpy matrix, not file
2013-02-22	quikr now works! the numbers are almost identical to matlab (is 6th digit ↵	mutantturkey
	precision an issue?). use a vflip and don't transpose and it works
2013-02-22	require more arguments since people will always be required to have certain ↵	mutantturkey
	ones, simplfies our checks, also remove all out print shapes
2013-02-22	Fixed quikr to actually work, insert headers of 1's and 0's into our arrays, ↵	Calvin
	fix a spelling error, writhout our solution vector in a csv formatted as floats
2013-02-19	added argument to accept output (solution vector) into a csv	mutantturkey

2013-02-19	saving changes to work remotely	Calvin

2013-02-18	set the input matrix properly	Calvin

2013-02-15	tried to run it, fixed ftr several times	Calvin

2013-02-15	added some comments	mutantturkey

2013-02-14	added arg parsing, and fixed a few errors, still have not tried to run code	Calvin

2013-02-14	quikr and quikr_train	Calvin