| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2013-10-29 | Fix a nasty bug in kmer-counting code | Calvin Morrison | |
| Memset of course does not deal properly with the unsigned long long type so we need to compensate by doing sizeof(unsigned long long) * width to fix the issue | |||
| 2013-10-28 | update kmer utils | Calvin Morrison | |
| 2013-10-28 | New sensing matrix format | Calvin Morrison | |
| quikr_train now has a new format that should allow for a more sane approach in terms of usability. headers are now packed into the format, and counts, not probabilities are included as each row the header looks like quikr version of format sequences kmer >header 2 4 12 22 ... n-mers >header2 .... | |||
| 2013-10-28 | update Makefile to be more sane and use targets correctly | Calvin Morrison | |
| 2013-10-28 | Update quikr_functions to read our sensing format | Calvin Morrison | |
| 2013-10-18 | add kmercounting code from dna-utils. update our make file to support ↵ | Calvin Morrison | |
| debugging, and update quikr to count-kmer code internally | |||
| 2013-09-05 | last fixes for 1.0.4v1.0.4 | Calvin Morrison | |
| 2013-09-05 | bump to version v1.0.4 | Calvin Morrison | |
| 2013-09-05 | Merge branch 'master' of github.com:mutantturkey/quikr | Calvin Morrison | |
| 2013-09-05 | build nbc and c before we install quikr | Calvin Morrison | |
| 2013-09-05 | update cli.markdown to remove debug | Calvin Morrison | |
| 2013-09-05 | Remove debugging version | Calvin Morrison | |
| remove the debugging option for quikr, since there is not a reason to keep it anymore, consider it cruft. Our users are unlikely to ever use it and the same for us - remove from manpage - remove from quikr.c | |||
| 2013-09-05 | README formatting | Calvin Morrison | |
| - add two spaces after each section - add question marks to the question titles | |||
| 2013-09-05 | Merge branch 'master' of github.com:EESI/quikr | Calvin Morrison | |
| 2013-08-30 | Update cli.markdown | Calvin Morrison | |
| Fix markdown formatting, and add some details about the pre-requisites for multifasta | |||
| 2013-08-29 | parse -h and --help and print out the help message | Calvin Morrison | |
| 2013-08-20 | Don't escape _'s | Calvin Morrison | |
| 2013-08-16 | Merge branch 'master' of github.com:EESI/quikr | Calvin Morrison | |
| 2013-08-16 | Merge branch 'master' of github.com:mutantturkey/quikr | Calvin Morrison | |
| 2013-08-16 | remove unused case | Calvin Morrison | |
| 2013-08-12 | Merge pull request #1 from gailrosen/patch-1 | Calvin Morrison | |
| Update matlab.markdown | |||
| 2013-08-12 | Update matlab.markdown | gailrosen | |
| The other version was not properly viewable. Now it is. | |||
| 2013-06-13 | use readdir and #omp criticalv1.0.3 | Calvin | |
| 2013-06-12 | update multifasta paths | Calvin | |
| 2013-06-12 | fix case | Calvin | |
| 2013-06-12 | update documention to include current arguments | Calvin | |
| 2013-06-12 | fix missing comma | Calvin | |
| 2013-06-12 | update version to v1.0.3 | Calvin | |
| 2013-06-12 | add --version and -V | Calvin | |
| 2013-06-12 | use larger size for count_commmand, remove extra quotes, and fix a broken ↵ | Calvin Morrison | |
| check in multifasta2otu | |||
| 2013-06-12 | Matlab: move multifasta2otu into the main quikr folder | Calvin Morrison | |
| 2013-06-11 | Merge branch 'master' of github.com:EESI/quikr | Calvin | |
| 2013-06-11 | Merge branch 'master' of github.com:mutantturkey/quikr | Calvin | |
| 2013-06-11 | finally push this patch to fix the lack of an end | Calvin | |
| 2013-06-11 | make documentation more consistent | Calvin Morrison | |
| 2013-06-11 | updated changelog | Calvin Morrison | |
| 2013-06-11 | remove file | Calvin Morrison | |
| 2013-06-11 | Merge branch 'master' of github.com:mutantturkey/quikr | Calvin | |
| 2013-06-11 | cli.markdown modifications for github formatting | Calvin Morrison | |
| 4 spaces for function --help 4 spaces for QIIME procedure remove extra backslash | |||
| 2013-06-11 | cli.markdown modifications | Calvin Morrison | |
| - removed reference to a download page that doesn't exist - fixed typo | |||
| 2013-06-11 | remove extra word | Calvin | |
| 2013-06-11 | updated functions with long | Calvin | |
| 2013-06-11 | Merge branch 'master' of github.com:EESI/quikr | Calvin | |
| 2013-06-11 | use int64_t for NNLS to avoid overflow issues | Calvin | |
| 2013-06-11 | small edits to man page | Calvin | |
| 2013-06-11 | use longs instead of ints, fix a mistake in the --help | Calvin | |
| 2013-06-10 | finish gzip decoding, YOU MUST retrain your api | Calvin | |
| 2013-06-10 | native zlib decoding for quikr/multifasta, was done earlier but never ↵ | Calvin | |
| commited for some reason | |||
| 2013-06-10 | remove unused variable | Calvin | |
| 2013-06-07 | quikrCustomTranied was not using the specified kmer. Use the correct kmer ↵ | Calvin Morrison | |
| and also rename rws and clmns to rows and columns respectively : | |||
 |
index : quikr.git | |
| Quikr - a bio classifier based on NNLS |
| aboutsummaryrefslogtreecommitdiff |