quikr.git - Quikr - a bio classifier based on NNLS

Age	Commit message (Collapse)	Author
2013-09-05	Remove debugging version	Calvin Morrison
	remove the debugging option for quikr, since there is not a reason to keep it anymore, consider it cruft. Our users are unlikely to ever use it and the same for us - remove from manpage - remove from quikr.c
2013-09-05	Merge branch 'master' of github.com:EESI/quikr	Calvin Morrison

2013-08-30	Update cli.markdown	Calvin Morrison
	Fix markdown formatting, and add some details about the pre-requisites for multifasta
2013-08-29	parse -h and --help and print out the help message	Calvin Morrison

2013-08-20	Don't escape _'s	Calvin Morrison

2013-08-16	Merge branch 'master' of github.com:EESI/quikr	Calvin Morrison

2013-08-16	Merge branch 'master' of github.com:mutantturkey/quikr	Calvin Morrison

2013-08-16	remove unused case	Calvin Morrison

2013-08-12	Merge pull request #1 from gailrosen/patch-1	Calvin Morrison
	Update matlab.markdown
2013-08-12	Update matlab.markdown	gailrosen
	The other version was not properly viewable. Now it is.
2013-06-13	use readdir and #omp criticalv1.0.3	Calvin

2013-06-12	update multifasta paths	Calvin

2013-06-12	fix case	Calvin

2013-06-12	update documention to include current arguments	Calvin

2013-06-12	fix missing comma	Calvin

2013-06-12	update version to v1.0.3	Calvin

2013-06-12	add --version and -V	Calvin

2013-06-12	use larger size for count_commmand, remove extra quotes, and fix a broken ↵	Calvin Morrison
	check in multifasta2otu
2013-06-12	Matlab: move multifasta2otu into the main quikr folder	Calvin Morrison

2013-06-11	Merge branch 'master' of github.com:EESI/quikr	Calvin

2013-06-11	Merge branch 'master' of github.com:mutantturkey/quikr	Calvin

2013-06-11	finally push this patch to fix the lack of an end	Calvin

2013-06-11	make documentation more consistent	Calvin Morrison

2013-06-11	updated changelog	Calvin Morrison

2013-06-11	remove file	Calvin Morrison

2013-06-11	Merge branch 'master' of github.com:mutantturkey/quikr	Calvin

2013-06-11	cli.markdown modifications for github formatting	Calvin Morrison
	4 spaces for function --help 4 spaces for QIIME procedure remove extra backslash
2013-06-11	cli.markdown modifications	Calvin Morrison
	- removed reference to a download page that doesn't exist - fixed typo
2013-06-11	remove extra word	Calvin

2013-06-11	updated functions with long	Calvin

2013-06-11	Merge branch 'master' of github.com:EESI/quikr	Calvin

2013-06-11	use int64_t for NNLS to avoid overflow issues	Calvin

2013-06-11	small edits to man page	Calvin

2013-06-11	use longs instead of ints, fix a mistake in the --help	Calvin

2013-06-10	finish gzip decoding, YOU MUST retrain your api	Calvin

2013-06-10	native zlib decoding for quikr/multifasta, was done earlier but never ↵	Calvin
	commited for some reason
2013-06-10	remove unused variable	Calvin

2013-06-07	quikrCustomTranied was not using the specified kmer. Use the correct kmer ↵	Calvin Morrison
	and also rename rws and clmns to rows and columns respectively :
2013-06-07	free getline's calls	Calvin Morrison

2013-06-07	updated help text and manpages	Calvin

2013-06-06	updated Changelog	Calvin

2013-06-06	fixed a malloc error, and fixed some strings	Calvin

2013-06-05	addd mlton as dependency	Calvin

2013-06-05	update links	Calvin

2013-05-28	Added not about generate_kmers	Calvin Morrison
	Added notes to the matlab documentation about the generate kmers requirement.
2013-05-28	Updated README for github	Calvin Morrison
	Link properly to our documentation in github, as well as LICENSE file.
2013-05-28	remove 6mers.txt	Calvin

2013-05-28	modified quikrTrain.m to not depend on a mer file, instead use the ↵	Calvin
	generate_kmers
2013-05-28	removed files	Calvin

2013-05-28	removed unused nbc code	Calvin