| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2013-10-29 | remove the fasta file requirement for multifasta, and no longer parse ↵ | Calvin Morrison | |
| headers (we already do) | |||
| 2013-10-29 | initial commit of multifasta_to_otu.c working with new format | Calvin Morrison | |
| 2013-10-29 | update tpyes for quikr_train.c | Calvin Morrison | |
| 2013-10-29 | update types for quikr_functions | Calvin Morrison | |
| 2013-10-29 | update types and check malloc | Calvin Morrison | |
| 2013-10-29 | append variables in makefile to reduce redundancy | Calvin Morrison | |
| 2013-10-29 | use type in memset, add +1 to our matrix width | Calvin Morrison | |
| 2013-10-29 | update errors from load_sensing_matrix | Calvin Morrison | |
| 2013-10-29 | update quikr to work with internally parsed sensing matrix | Calvin Morrison | |
| 2013-10-29 | update header | Calvin Morrison | |
| 2013-10-29 | fix memset in quikr_train as weel | Calvin Morrison | |
| 2013-10-29 | Fix a nasty bug in kmer-counting code | Calvin Morrison | |
| Memset of course does not deal properly with the unsigned long long type so we need to compensate by doing sizeof(unsigned long long) * width to fix the issue | |||
| 2013-10-28 | update kmer utils | Calvin Morrison | |
| 2013-10-28 | New sensing matrix format | Calvin Morrison | |
| quikr_train now has a new format that should allow for a more sane approach in terms of usability. headers are now packed into the format, and counts, not probabilities are included as each row the header looks like quikr version of format sequences kmer >header 2 4 12 22 ... n-mers >header2 .... | |||
| 2013-10-28 | update Makefile to be more sane and use targets correctly | Calvin Morrison | |
| 2013-10-28 | Update quikr_functions to read our sensing format | Calvin Morrison | |
| 2013-10-18 | add kmercounting code from dna-utils. update our make file to support ↵ | Calvin Morrison | |
| debugging, and update quikr to count-kmer code internally | |||
| 2013-09-05 | last fixes for 1.0.4v1.0.4 | Calvin Morrison | |
| 2013-09-05 | bump to version v1.0.4 | Calvin Morrison | |
| 2013-09-05 | Merge branch 'master' of github.com:mutantturkey/quikr | Calvin Morrison | |
| 2013-09-05 | build nbc and c before we install quikr | Calvin Morrison | |
| 2013-09-05 | update cli.markdown to remove debug | Calvin Morrison | |
| 2013-09-05 | Remove debugging version | Calvin Morrison | |
| remove the debugging option for quikr, since there is not a reason to keep it anymore, consider it cruft. Our users are unlikely to ever use it and the same for us - remove from manpage - remove from quikr.c | |||
| 2013-09-05 | README formatting | Calvin Morrison | |
| - add two spaces after each section - add question marks to the question titles | |||
| 2013-09-05 | Merge branch 'master' of github.com:EESI/quikr | Calvin Morrison | |
| 2013-08-30 | Update cli.markdown | Calvin Morrison | |
| Fix markdown formatting, and add some details about the pre-requisites for multifasta | |||
| 2013-08-29 | parse -h and --help and print out the help message | Calvin Morrison | |
| 2013-08-20 | Don't escape _'s | Calvin Morrison | |
| 2013-08-16 | Merge branch 'master' of github.com:EESI/quikr | Calvin Morrison | |
| 2013-08-16 | Merge branch 'master' of github.com:mutantturkey/quikr | Calvin Morrison | |
| 2013-08-16 | remove unused case | Calvin Morrison | |
| 2013-08-12 | Merge pull request #1 from gailrosen/patch-1 | Calvin Morrison | |
| Update matlab.markdown | |||
| 2013-08-12 | Update matlab.markdown | gailrosen | |
| The other version was not properly viewable. Now it is. | |||
| 2013-06-13 | use readdir and #omp criticalv1.0.3 | Calvin | |
| 2013-06-12 | update multifasta paths | Calvin | |
| 2013-06-12 | fix case | Calvin | |
| 2013-06-12 | update documention to include current arguments | Calvin | |
| 2013-06-12 | fix missing comma | Calvin | |
| 2013-06-12 | update version to v1.0.3 | Calvin | |
| 2013-06-12 | add --version and -V | Calvin | |
| 2013-06-12 | use larger size for count_commmand, remove extra quotes, and fix a broken ↵ | Calvin Morrison | |
| check in multifasta2otu | |||
| 2013-06-12 | Matlab: move multifasta2otu into the main quikr folder | Calvin Morrison | |
| 2013-06-11 | Merge branch 'master' of github.com:EESI/quikr | Calvin | |
| 2013-06-11 | Merge branch 'master' of github.com:mutantturkey/quikr | Calvin | |
| 2013-06-11 | finally push this patch to fix the lack of an end | Calvin | |
| 2013-06-11 | make documentation more consistent | Calvin Morrison | |
| 2013-06-11 | updated changelog | Calvin Morrison | |
| 2013-06-11 | remove file | Calvin Morrison | |
| 2013-06-11 | Merge branch 'master' of github.com:mutantturkey/quikr | Calvin | |
| 2013-06-11 | cli.markdown modifications for github formatting | Calvin Morrison | |
| 4 spaces for function --help 4 spaces for QIIME procedure remove extra backslash | |||
 |
index : quikr.git | |
| Quikr - a bio classifier based on NNLS |
| aboutsummaryrefslogtreecommitdiff |