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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-06 20:37:04 -0500 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-06 20:37:04 -0500 |
| commit | d3a935d76bc5ee6c211184c50790e6576654ca67 (patch) | |
| tree | df5c6ab8913e6820ea5973ae1edf4641dd038369 /src/matlab/quikr.m | |
| parent | 36e44b275cc40c7151bbc5c311bef4fd31d6f89c (diff) | |
UNVERIFIED but progress on converting quikr.m to dna-utils
Diffstat (limited to 'src/matlab/quikr.m')
| -rw-r--r-- | src/matlab/quikr.m | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/src/matlab/quikr.m b/src/matlab/quikr.m index f295d2b..aa2a271 100644 --- a/src/matlab/quikr.m +++ b/src/matlab/quikr.m @@ -15,9 +15,9 @@ if nargin>1 error('too many input arguments');
end
-[status, counts]=unix(['count-kmers -r 6 -1 -u ' inputfasta]); %count the 6-mers in the fasta file, in the forward direction, return the counts without labels
+[status, counts]=unix(['kmer_total_count -k 6 -i ' inputfasta]); %count the 6-mers in the fasta file, in the forward direction, return the counts without labels
if status ~= 0
- error('count-kmers failed: ensure count-kmers is in your path.');
+ error('kmer_total_count failed: ensure kmer_total_count is in your path.');
end
counts=textscan(counts,'%f'); %convert into floats
|