From d3a935d76bc5ee6c211184c50790e6576654ca67 Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Thu, 6 Mar 2014 20:37:04 -0500 Subject: UNVERIFIED but progress on converting quikr.m to dna-utils --- src/matlab/quikr.m | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'src/matlab/quikr.m') diff --git a/src/matlab/quikr.m b/src/matlab/quikr.m index f295d2b..aa2a271 100644 --- a/src/matlab/quikr.m +++ b/src/matlab/quikr.m @@ -15,9 +15,9 @@ if nargin>1 error('too many input arguments'); end -[status, counts]=unix(['count-kmers -r 6 -1 -u ' inputfasta]); %count the 6-mers in the fasta file, in the forward direction, return the counts without labels +[status, counts]=unix(['kmer_total_count -k 6 -i ' inputfasta]); %count the 6-mers in the fasta file, in the forward direction, return the counts without labels if status ~= 0 - error('count-kmers failed: ensure count-kmers is in your path.'); + error('kmer_total_count failed: ensure kmer_total_count is in your path.'); end counts=textscan(counts,'%f'); %convert into floats -- cgit v1.2.3