aboutsummaryrefslogtreecommitdiff
path: root/src/galaxy/multifasta2otu.xml
diff options
context:
space:
mode:
authorCalvin Morrison <mutantturkey@gmail.com>2014-03-19 15:08:22 -0400
committerCalvin Morrison <mutantturkey@gmail.com>2014-03-19 15:08:22 -0400
commit66a19476df582c28c04f657cd11aaf1fb1957c39 (patch)
treea1498fb24bf395c9e1569487ee47fa52d9104413 /src/galaxy/multifasta2otu.xml
parent177d21491585916ba8b1159bd127e9e668f7a92d (diff)
add nonworking multifasta to galaxy
Diffstat (limited to 'src/galaxy/multifasta2otu.xml')
-rw-r--r--src/galaxy/multifasta2otu.xml19
1 files changed, 19 insertions, 0 deletions
diff --git a/src/galaxy/multifasta2otu.xml b/src/galaxy/multifasta2otu.xml
new file mode 100644
index 0000000..b80f8b2
--- /dev/null
+++ b/src/galaxy/multifasta2otu.xml
@@ -0,0 +1,19 @@
+<tool id="multifasta" name="Multifasta">
+ <description>Get Abundances on Multiple Files</description>
+ <command interpreter="bash">multifasta_to_otu -k $kmer -s $db -f &lt;( echo
+#for $input in $inputs:
+"${input}"
+#end for
+ | xargs -n 1 ) -o $output</command>
+ <inputs>
+ <param name="inputs" multiple="true" type="data" format="fasta" label="input fasta"/>
+ <param name="db" type="data" format="data" label="trained database"/>
+ <param name="lambda" type="integer" size="6" value="10000" label="lambda" help="default 10000"/>
+ <param name="kmer" type="integer" size="2" value="6" label="What mer size to use?" help="range 6 - 12"/>
+ </inputs>
+ <outputs>
+ <data name="output" format="tabular"/>
+ </outputs>
+ <help>
+ </help>
+</tool>