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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-19 15:08:22 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-19 15:08:22 -0400 |
| commit | 66a19476df582c28c04f657cd11aaf1fb1957c39 (patch) | |
| tree | a1498fb24bf395c9e1569487ee47fa52d9104413 | |
| parent | 177d21491585916ba8b1159bd127e9e668f7a92d (diff) | |
add nonworking multifasta to galaxy
| -rw-r--r-- | src/galaxy/multifasta2otu.xml | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/src/galaxy/multifasta2otu.xml b/src/galaxy/multifasta2otu.xml new file mode 100644 index 0000000..b80f8b2 --- /dev/null +++ b/src/galaxy/multifasta2otu.xml @@ -0,0 +1,19 @@ +<tool id="multifasta" name="Multifasta"> + <description>Get Abundances on Multiple Files</description> + <command interpreter="bash">multifasta_to_otu -k $kmer -s $db -f <( echo +#for $input in $inputs: +"${input}" +#end for + | xargs -n 1 ) -o $output</command> + <inputs> + <param name="inputs" multiple="true" type="data" format="fasta" label="input fasta"/> + <param name="db" type="data" format="data" label="trained database"/> + <param name="lambda" type="integer" size="6" value="10000" label="lambda" help="default 10000"/> + <param name="kmer" type="integer" size="2" value="6" label="What mer size to use?" help="range 6 - 12"/> + </inputs> + <outputs> + <data name="output" format="tabular"/> + </outputs> + <help> + </help> +</tool> |