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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-19 16:47:32 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-19 16:47:32 -0400 |
| commit | d2a7c2a428a5c5ead81d87610d6b04a0e179295d (patch) | |
| tree | defa322d4b4a34e3776406bbb8e31026d2772686 /src/c/multifasta_to_otu.1 | |
| parent | 66a19476df582c28c04f657cd11aaf1fb1957c39 (diff) | |
rarity argument support and documentation
Diffstat (limited to 'src/c/multifasta_to_otu.1')
| -rw-r--r-- | src/c/multifasta_to_otu.1 | 5 |
1 files changed, 5 insertions, 0 deletions
diff --git a/src/c/multifasta_to_otu.1 b/src/c/multifasta_to_otu.1 index d261351..2825135 100644 --- a/src/c/multifasta_to_otu.1 +++ b/src/c/multifasta_to_otu.1 @@ -13,6 +13,8 @@ multifasta_to_otu \- create a QIIME OTU table based on Quikr results. .IR kmer ] .RB [ \-l .IR lambda ] +.RB [ \-r +.IR rare-percent ] .RB [ \-j .IR jobs ] .RB [ \-o @@ -43,6 +45,9 @@ specify what size of kmer to use. (default value is 6) .B \-l, --lambda lambda value to use. (default value is 10000) .TP +.B \-r, --rare-percent +remove mers from classification if their values are less than the x percentile of values in the sample (default value is 10000) +.TP .B \-j, --jobs specifies how many jobs to run at once. (default value is the number of CPUs) .TP |