From d2a7c2a428a5c5ead81d87610d6b04a0e179295d Mon Sep 17 00:00:00 2001
From: Calvin Morrison <mutantturkey@gmail.com>
Date: Wed, 19 Mar 2014 16:47:32 -0400
Subject: rarity argument support and documentation

---
 src/c/multifasta_to_otu.1 | 5 +++++
 1 file changed, 5 insertions(+)

(limited to 'src/c/multifasta_to_otu.1')

diff --git a/src/c/multifasta_to_otu.1 b/src/c/multifasta_to_otu.1
index d261351..2825135 100644
--- a/src/c/multifasta_to_otu.1
+++ b/src/c/multifasta_to_otu.1
@@ -13,6 +13,8 @@ multifasta_to_otu \- create a QIIME OTU table based on Quikr results.
 .IR kmer ]
 .RB [ \-l
 .IR lambda ]
+.RB [ \-r
+.IR rare-percent ]
 .RB [ \-j
 .IR jobs ]
 .RB [ \-o
@@ -43,6 +45,9 @@ specify what size of kmer to use. (default value is 6)
 .B \-l, --lambda
 lambda value to use. (default value is 10000)
 .TP
+.B \-r, --rare-percent
+remove mers from classification if their values are less than the x percentile of values in the sample (default value is 10000)
+.TP
 .B \-j, --jobs
 specifies how many jobs to run at once. (default value is the number of CPUs)
 .TP
-- 
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