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| author | Calvin <calvin@EESI> | 2013-05-15 12:43:40 -0400 |
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| committer | Calvin <calvin@EESI> | 2013-05-15 12:43:40 -0400 |
| commit | c788e9089efa7ba6971846b5cdd724b2d8e90e26 (patch) | |
| tree | 9ed91b9f565637ff74bf025e8434f5efa32819c1 /doc/install.markdown | |
| parent | 970794681e1c20b4622f278b683026ac3a9acff4 (diff) | |
change links to work for github
Diffstat (limited to 'doc/install.markdown')
| -rw-r--r-- | doc/install.markdown | 47 |
1 files changed, 0 insertions, 47 deletions
diff --git a/doc/install.markdown b/doc/install.markdown deleted file mode 100644 index 82004aa..0000000 --- a/doc/install.markdown +++ /dev/null @@ -1,47 +0,0 @@ -# How Can I Install The Quikr Utility? # -To use Quikr there are several prerequisites. - -## Requirements ## -+ Mac OS X 10.6.8 or GNU/Linux -+ 4Gb of RAM minimum. Absolutely neccessary. -+ gcc that supports OpenMP - -### Python Requirements ### -+ Python 2.7 -+ Scipy -+ Numpy -+ BioPython - -### Mac Requirements ### -+ Mac OS X 10.6.8 (what we have tested) -+ GCC 4.7 or newer. (gcc 4.2 did not work, and is the default installation) -+ OCaml compiler mlton -+ OpenMP libraries (libgomp, usually comes with gcc) - -### Linux Requirements ### -+ GCC 4.7 or newer -+ OCaml compiler mlton -+ OpenMP libraries (libgomp, usually comes with gcc) - -We also have a Quikr implementation in Matlab so that you can easily integrate -Quikr into your custom programs and scripts. - -### Installation ### -Our Quikr code is available on our sourceforge download page: - -[http://sourceforge.net/projects/quikr/](sourceforge project page) - -Our development GIT repository is available here: - -[http://rosalind.ece.drexel.edu/git/quikr/](rosalind.ece.drexel.edu/git/quikr/) - -To install quikr, download our project and in the folder run: - - make - sudo make install - -This will install the quikr, quikr\_train and multifasta\_to\_otu utilities. -To install the python scripts and module systemwide, run - - make python - sudo make install_python |