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| author | Calvin <calvin@EESI> | 2013-03-13 14:15:22 -0400 |
|---|---|---|
| committer | Calvin <calvin@EESI> | 2013-03-13 14:15:22 -0400 |
| commit | 7127badd2a1ba320eb96fea0d5543664d92912c4 (patch) | |
| tree | e281feae6ec6f6ea8b6b7b839d9f0f5282a682b2 /doc/cli.markdown | |
| parent | c6398e29628d57eca7cd481623decf7ce337b2d6 (diff) | |
added matlab markdown and edited cli
Diffstat (limited to 'doc/cli.markdown')
| -rw-r--r-- | doc/cli.markdown | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/doc/cli.markdown b/doc/cli.markdown index c7f8e11..8d25337 100644 --- a/doc/cli.markdown +++ b/doc/cli.markdown @@ -26,6 +26,9 @@ Quikr returns the estimated frequencies of batcteria present when given a input FASTA file. A default trained matrix will be used if none is supplied You must supply a kmer and default lambda if using a custom trained matrix. +### Usage ### +quikr returns the solution vector as a csv file. + quikr's optional arguments: -f, --fasta, the fasta file sample -o, --output OUTPUT, the output path (csv output) @@ -34,7 +37,7 @@ quikr's optional arguments: -k, --kmer, this specifies which kmer to use (default is 6) -### Troubleshooting ### +# Troubleshooting # If you are having trouble, and these solutions don't work. Please contact the developers with questions and issues. |