From 7127badd2a1ba320eb96fea0d5543664d92912c4 Mon Sep 17 00:00:00 2001 From: Calvin Date: Wed, 13 Mar 2013 14:15:22 -0400 Subject: added matlab markdown and edited cli --- doc/cli.markdown | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) (limited to 'doc/cli.markdown') diff --git a/doc/cli.markdown b/doc/cli.markdown index c7f8e11..8d25337 100644 --- a/doc/cli.markdown +++ b/doc/cli.markdown @@ -26,6 +26,9 @@ Quikr returns the estimated frequencies of batcteria present when given a input FASTA file. A default trained matrix will be used if none is supplied You must supply a kmer and default lambda if using a custom trained matrix. +### Usage ### +quikr returns the solution vector as a csv file. + quikr's optional arguments: -f, --fasta, the fasta file sample -o, --output OUTPUT, the output path (csv output) @@ -34,7 +37,7 @@ quikr's optional arguments: -k, --kmer, this specifies which kmer to use (default is 6) -### Troubleshooting ### +# Troubleshooting # If you are having trouble, and these solutions don't work. Please contact the developers with questions and issues. -- cgit v1.2.3