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path: root/kmer_counts_per_sequence.c
AgeCommit message (Collapse)Author
2014-04-18add OSX support, or any supprot for people without getlineCalvin Morrison
2014-04-09MERGE sparse trunk into masterCalvin Morrison
2014-03-12fix missing breakv0.0.4Calvin Morrison
2014-03-12update cli for reverse-compliment countingCalvin Morrison
2014-03-06update readme, add a check_null_ptr function to clear up clutterCalvin Morrison
2014-02-27use sparse always if we use --merCalvin Morrison
2014-02-27fixed sparse in combination with --mer-fileCalvin Morrison
2014-02-24add more verbose error messages and add more memory checksCalvin Morrison
2014-02-01remove str alloc and replace inside s for strstrCalvin Morrison
2014-02-01use pow_four insteadCalvin Morrison
2014-02-01add getopts to kmer_counts_per_sequene and sparse output optionsCalvin Morrison
2014-02-01get rid of position, add helpCalvin Morrison
2014-01-31fix argv/c checkingCalvin Morrison
2014-01-30kmer_count_per_sequence: add option to load specific mers from file, add ↵Calvin Morrison
multiline ecounting
2014-01-07fix kmer_counts_per_sequence, make sure we convert the array fully, and ↵Calvin Morrison
update kmer_utils for str[i] == 5 instead of >> 2
2013-11-07rename to counts per sequence, don't provide frequencies only countsCalvin Morrison
2013-11-07rename to counts per sequence, don't provide frequencies only countsCalvin Morrison