aboutsummaryrefslogtreecommitdiff
path: root/kmer_utils.h
diff options
context:
space:
mode:
Diffstat (limited to 'kmer_utils.h')
-rw-r--r--kmer_utils.h13
1 files changed, 6 insertions, 7 deletions
diff --git a/kmer_utils.h b/kmer_utils.h
index 9f4d34f..5932316 100644
--- a/kmer_utils.h
+++ b/kmer_utils.h
@@ -1,11 +1,10 @@
// Kmer functions
-void convert_kmer_to_num(char *str, unsigned long length);
-unsigned long num_to_index(const char *str, const int kmer, long error_pos);
-char *index_to_kmer(unsigned long long index, long kmer);
-unsigned long long * get_kmer_counts_from_file(FILE *fh, int kmer);
+void kmer_convert_kmer_to_num(char *str, unsigned long length);
+unsigned long kmer_num_to_index(const char *str, const int kmer, long error_pos);
+char *kmer_index_to_kmer(unsigned long long index, long kmer);
+unsigned long long * kmer_counts_from_file(FILE *fh, int kmer);
// Utility functions
-char *strnstrip(const char *s, char *dest, int c, int len);
-unsigned long long pow_four(unsigned long long x);
+unsigned long long kmer_pow_four(unsigned long long x);
-extern const unsigned char alpha[256];
+extern const unsigned char kmer_alpha[256];