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authororbitz <orbitz@gmail.com>2013-12-29 12:53:38 +0100
committerorbitz <orbitz@gmail.com>2013-12-29 12:53:38 +0100
commit7b3377714a57d94db3e0efb886e7efe5e14999ca (patch)
tree511d332c49ca94e6c2a68bfbc99e769a6139e887 /kmer_utils.h
parent1701700a02e338835822c1a6d5c61d35ef9cf4e7 (diff)
Namespace all the functions and make private ones static
Diffstat (limited to 'kmer_utils.h')
-rw-r--r--kmer_utils.h13
1 files changed, 6 insertions, 7 deletions
diff --git a/kmer_utils.h b/kmer_utils.h
index 9f4d34f..5932316 100644
--- a/kmer_utils.h
+++ b/kmer_utils.h
@@ -1,11 +1,10 @@
// Kmer functions
-void convert_kmer_to_num(char *str, unsigned long length);
-unsigned long num_to_index(const char *str, const int kmer, long error_pos);
-char *index_to_kmer(unsigned long long index, long kmer);
-unsigned long long * get_kmer_counts_from_file(FILE *fh, int kmer);
+void kmer_convert_kmer_to_num(char *str, unsigned long length);
+unsigned long kmer_num_to_index(const char *str, const int kmer, long error_pos);
+char *kmer_index_to_kmer(unsigned long long index, long kmer);
+unsigned long long * kmer_counts_from_file(FILE *fh, int kmer);
// Utility functions
-char *strnstrip(const char *s, char *dest, int c, int len);
-unsigned long long pow_four(unsigned long long x);
+unsigned long long kmer_pow_four(unsigned long long x);
-extern const unsigned char alpha[256];
+extern const unsigned char kmer_alpha[256];