index
:
SelectiveWholeGenomeAmplification.git
master
Parameterized sweeps of FASTA files to help locate useful primers. Work done for Penn bio research guys
about
summary
refs
log
tree
commit
diff
log msg
author
committer
range
Age
Commit message (
Expand
)
Author
2014-04-23
better flag support
Calvin Morrison
2014-04-23
simplify select_mers.py
Calvin Morrison
2014-04-21
fix SWGAUI
Calvin Morrison
2014-04-21
be specific
Calvin Morrison
2014-04-20
force bash on lock
Calvin Morrison
2014-04-18
force 2.7
Calvin Morrison
2014-04-18
remove lock if fail
Calvin Morrison
2014-04-18
use regular total count
Calvin Morrison
2014-04-17
update filter call
Calvin Morrison
2014-04-14
keep asking for files if they don't exist, filter melting temperature with up...
Calvin Morrison
2014-04-14
added new stuff for filter melting temperature
Calvin Morrison
2014-04-14
don't use strstream, use kmer_locations
Calvin Morrison
2014-04-14
mkdir on lock claim
Calvin Morrison
2014-04-08
add link
Calvin Morrison
2014-04-08
add lock to makefile
Calvin Morrison
2014-04-08
more docs and add strand
Calvin Morrison
2014-04-08
add lock
Calvin Morrison
2014-04-08
update arg info
Calvin Morrison
2014-04-07
tabular output
Calvin Morrison
2014-04-07
working output full genome.py
Calvin Morrison
2014-04-07
fix stream counting so it doesn't count over
Calvin Morrison
2014-04-07
initial commit of output_full_genome.py
Calvin Morrison
2014-04-07
final renaming
Calvin Morrison
2014-04-07
Rename!
Calvin Morrison
2014-04-07
add genome length
Calvin Morrison
2014-04-07
+x average_binding
Calvin Morrison
2014-04-07
fix reverse counts and output genome length
Calvin Morrison
2014-04-07
wait on exit
Calvin Morrison
2014-04-03
fix min in README
Calvin Morrison
2014-04-03
add scoring to paramters
Calvin Morrison
2014-04-02
use min
Calvin Morrison
2014-04-02
add exit codes
Calvin Morrison
2014-04-02
add sort_by support for top-scores
Calvin Morrison
2014-04-02
move some table stuff, add sortby param
Calvin Morrison
2014-04-02
add description blurb, this closes #16
Calvin Morrison
2014-04-01
remove a debug line
Calvin Morrison
2014-04-01
add section for rescoring
Calvin Morrison
2014-04-01
add feature to read from previously scored all-scores file, clean up code as ...
Calvin Morrison
2014-04-01
check exit status and more error checking in check_feasilbe
Calvin Morrison
2014-03-31
update folder name
Calvin Morrison
2014-03-31
add filter documenation to readme
Calvin Morrison
2014-03-31
fix bug in using combination file. this closes #18
Calvin Morrison
2014-03-31
clean up readme
Calvin Morrison
2014-03-31
update output tree
Calvin Morrison
2014-03-31
fix header
Calvin Morrison
2014-03-31
add UI for scorign func, update doc and varaibles
Calvin Morrison
2014-03-31
add scorign to header and paramters and such
Calvin Morrison
2014-03-31
update README.md for custom scoring
Calvin Morrison
2014-03-31
add custom scoring
Calvin Morrison
2014-03-31
proper sizes with custom mers
Calvin Morrison
[next]