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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-04-07 12:45:28 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-04-07 12:45:28 -0400 |
| commit | ad2831e63e47c2575d86319e5a90f746ba567f11 (patch) | |
| tree | e2459b5f3b8bbbc0f0e9a44f3b8d8bcb7fde1e20 | |
| parent | ff00b06e740cd7b3dbccf48a06cf4a721e83660b (diff) | |
add genome length
| -rwxr-xr-x | src/score_mers.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/src/score_mers.py b/src/score_mers.py index b3edb61..e245f39 100755 --- a/src/score_mers.py +++ b/src/score_mers.py @@ -220,7 +220,8 @@ def percentage(part, whole, precision=2): return str(percent) + "%" def write_header(fh): - fh.write("# variables used: max_select=" + str(max_select) + " max_check=" + str(max_check) + " max_mer_distance=" + str(max_mer_distance) + " max_consecutive_binding=" + str(max_consecutive_binding) + " primer_weight=" + str(primer_weight) + "\n") + fh.write("# variables used: max_select=" + str(max_select) + " max_check=" + str(max_check) + " max_mer_distance=" + str(max_mer_distance) + " max_consecutive_binding=" + str(max_consecutive_binding) + " primer_weight=" + str(primer_weight) + " ") + fh.write("fg_genome_length=" + str(fg_genome_length) + " bg_genome_length=" + str(bg_genome_length) + "\n") fh.write("# scoring function: " + str(score_str) + "\n") fh.write("#nb_primers\tCombination\tScore\tFG_mean_dist\tFG_stdev_dist\tBG_ratio\n") |