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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-04-18 11:59:01 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-04-18 11:59:01 -0400 |
| commit | 48c27ee437771a815bff4fde413e9d9e09fa9f62 (patch) | |
| tree | 290aa97d973d1a046ace3e5e34e074a2ede7263b | |
| parent | b9fd58701ae7f50c5dda065f98cfd093263ec5a5 (diff) | |
use regular total count
| -rwxr-xr-x | SelectiveWholeGenomeAmplification | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/SelectiveWholeGenomeAmplification b/SelectiveWholeGenomeAmplification index 0521ef5..8fb5e4f 100755 --- a/SelectiveWholeGenomeAmplification +++ b/SelectiveWholeGenomeAmplification @@ -31,7 +31,7 @@ check_mers() { for (( mer = min_mer_range; mer <= max_mer_range; mer++)) ; do if [[ ! -e "$counts"-counts-"$mer" ]]; then echo " checking $mer mers for $fasta_file" - kmer_continuous_count -c -i "$fasta_file" -k "$mer" -l -n > "$counts"-counts-"$mer" || exit 1 + kmer_total_count -c -i "$fasta_file" -k "$mer" -l -n > "$counts"-counts-"$mer" || exit 1 else echo " $mer-mers already done for $fasta_file (assuming no change)" fi |