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SelectiveWholeGenomeAmplification.git
master
Parameterized sweeps of FASTA files to help locate useful primers. Work done for Penn bio research guys
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Author
2014-03-05
fix type
Calvin Morrison
2014-03-03
update defaults and align variable names with global env variables
Calvin Morrison
2014-03-03
update readnme
Calvin Morrison
2014-03-03
update readnme
Calvin Morrison
2014-03-03
add load_heterodimer_dic function
Calvin Morrison
2014-03-03
check heterodimer dic first because it's likely to be the #1 cause of issues
Calvin Morrison
2014-03-03
add check to see if results are even possible, and use gzip out
Calvin Morrison
2014-03-03
update arguemnts, make {fg,bg}_genome_length global
Calvin Morrison
2014-03-03
update parameters file
Calvin Morrison
2014-02-17
output filters into output directory not temp to enable multiple runs at once
Calvin Morrison
2014-02-05
use a ifilter outside
Calvin Morrison
2014-02-04
seperate out scoring stuff into our iterator as a filter
Calvin Morrison
2014-02-04
add check functions to filter without calling the jobs
Calvin Morrison
2014-02-04
max_consecutive speed up
Calvin Morrison
2014-02-04
update save locations
Calvin Morrison
2014-01-30
update score mers with hererodimers
Calvin Morrison
2014-01-29
fix warning
Calvin Morrison
2014-01-29
rm
Calvin Morrison
2014-01-29
fix warning
Calvin Morrison
2014-01-29
fix corner case
Calvin Morrison
2014-01-29
add filtering based on consecutive mer lengths
Calvin Morrison
2014-01-28
add max_consecutive_binding.py
Calvin Morrison
2014-01-23
update min mer, add fg and bg to parameters
Calvin Morrison
2014-01-22
output parameters
Calvin Morrison
2014-01-22
add different outputs for each run
Calvin Morrison
2014-01-22
rename in script
Calvin Morrison
2014-01-22
split
Calvin Morrison
2014-01-22
fix exit code
Calvin Morrison
2014-01-21
split out score and selection
Calvin Morrison
2014-01-21
return to close ones as errors as well, add timing
Calvin Morrison
2014-01-21
fix indentation
Calvin Morrison
2014-01-21
add output file
Calvin Morrison
2014-01-21
add defaults for env variables and check argc
Calvin Morrison
2014-01-21
add python shebang
Calvin Morrison
2014-01-20
really use global
Calvin Morrison
2014-01-20
use global select_mers.py
Calvin Morrison
2014-01-20
add col
Calvin Morrison
2014-01-20
add fg and bg to README
Calvin Morrison
2014-01-20
updated script and ui
Calvin Morrison
2014-01-20
add interactive prompt to query user for different variables
Calvin Morrison
2014-01-17
update README.md
Calvin Morrison
2014-01-17
check argc
Calvin Morrison
2014-01-17
major select_mers.py changes
Calvin Morrison
2014-01-17
Merge branch 'master' of github.com:mutantturkey/SelectiveGenomeAmplification
Calvin Morrison
2014-01-17
add dest and proper install path
Calvin Morrison
2014-01-17
rename SelectiveGenomeAmplification
Calvin Morrison
2014-01-17
fix github display
Calvin Morrison
2014-01-17
update readme
Calvin Morrison
2014-01-17
move melting temp py script to src
Calvin Morrison
2014-01-17
fix
Calvin Morrison
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