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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-02-04 13:22:51 -0500 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-02-04 13:22:51 -0500 |
| commit | a3abc30f96727d50fe510b494c6b715f2307c765 (patch) | |
| tree | c760f301ec2529c793d3595c4f54865a6db67301 | |
| parent | d00fc2bb1864c78fa926a5a84a693d4f84445723 (diff) | |
max_consecutive speed up
| -rwxr-xr-x | src/filter_max_consecutive_binding.py | 6 | ||||
| -rwxr-xr-x | src/score_mers.py | 6 |
2 files changed, 6 insertions, 6 deletions
diff --git a/src/filter_max_consecutive_binding.py b/src/filter_max_consecutive_binding.py index 9054dac..ad798e2 100755 --- a/src/filter_max_consecutive_binding.py +++ b/src/filter_max_consecutive_binding.py @@ -20,12 +20,12 @@ def max_consecutive_binding(mer1, mer2): consecutive = 0 for x in range(len(mer2)): if binding[mer1[offset+x]] == mer2[x]: - consecutive = consecutive + 1 + consecutive += 1 + if consecutive > max_bind: + max_bind = consecutive else: consecutive = 0 - max_bind = max(consecutive,max_bind) - return max_bind def test(): diff --git a/src/score_mers.py b/src/score_mers.py index c7ecf99..d33d23b 100755 --- a/src/score_mers.py +++ b/src/score_mers.py @@ -51,12 +51,12 @@ def max_consecutive_binding(mer1, mer2): consecutive = 0 for x in range(len(mer2)): if binding[mer1[offset+x]] == mer2[x]: - consecutive = consecutive + 1 + consecutive += 1 + if consecutive > max_bind: + max_bind = consecutive else: consecutive = 0 - max_bind = max(consecutive,max_bind) - return max_bind def populate_locations(input_fn, mers, mer): |