diff options
Diffstat (limited to 'src')
| -rwxr-xr-x | src/select_mers.py | 11 |
1 files changed, 3 insertions, 8 deletions
diff --git a/src/select_mers.py b/src/select_mers.py index 21306cc..ef019c0 100755 --- a/src/select_mers.py +++ b/src/select_mers.py @@ -7,18 +7,13 @@ bg_mers = {} min_mer_count = int(os.environ.get("min_mer_count", 0)); -if(len(sys.argv) == 5): +if(len(sys.argv) == 3): fg_count_fn = sys.argv[1] - fg_fasta_fn = sys.argv[2] - bg_count_fn = sys.argv[3] - bg_fasta_fn = sys.argv[4] - - fg_genome_length = os.path.getsize(fg_fasta_fn) - bg_genome_length = os.path.getsize(bg_fasta_fn) + bg_count_fn = sys.argv[2] else: print len(sys.argv) print "please specify your inputs" - print "ex: select_mers.py fg_counts fg_fasta bg_counts bg_fasta" + print "ex: select_mers.py fg_counts bg_counts" exit() |