diff options
Diffstat (limited to 'src')
| -rwxr-xr-x | src/lock | 4 | ||||
| -rw-r--r-- | src/remove_mers.py | 17 |
2 files changed, 19 insertions, 2 deletions
@@ -7,9 +7,9 @@ lock() { fi if mkdir "$1" &>/dev/null; then - echo "lock $1 created" >&2 + echo " lock $1 created" >&2 else - echo "lock $1 found, waiting for unlock" >&2 + echo " lock $1 found, waiting for unlock" >&2 while true; do sleep 2; if mkdir "$1" &>/dev/null; then diff --git a/src/remove_mers.py b/src/remove_mers.py new file mode 100644 index 0000000..b18992a --- /dev/null +++ b/src/remove_mers.py @@ -0,0 +1,17 @@ +#!/usr/bin/env python2.7 +import sys + +if __name__ == "__main__": + + if len(sys.argv) is 1: + exit("Filter mers, input is stdin, output is stdout, mers are argv") + + mers_to_delete = set() + + for mer in sys.argv[1:]: + mers_to_delete.add(mer) + + for line in sys.stdin: + if line.split()[0] not in mers_to_delete: + sys.stdout.write(line) + |