diff options
Diffstat (limited to 'SelectiveWholeGenomeAmplification')
| -rwxr-xr-x | SelectiveWholeGenomeAmplification | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/SelectiveWholeGenomeAmplification b/SelectiveWholeGenomeAmplification index 8304387..b2b95ca 100755 --- a/SelectiveWholeGenomeAmplification +++ b/SelectiveWholeGenomeAmplification @@ -335,7 +335,7 @@ if [[ -n "$step_filters" ]] || [[ -n "$all" ]]; then check_non_empty "$ignore_all_mers_counts" "ignore all mers from file " echo " filtering mers that appear less frequently than the average binding site distance ($min_foreground_binding_average)" - filter_average_binding.py "$ignore_all_mers_counts" "$min_foreground_binding_average" < "$fg_counts" > "$average_binding" || exit 1 + filter_average_binding.py --fasta "$foreground" --minimum "$min_foreground_binding_average" --counts "$ignore_all_mers_counts" > "$average_binding" || exit 1 check_non_empty "$average_binding" "average binding" echo " filtering mers that are not in the melting range ($min_melting_temp-$max_melting_temp)" |