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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-08-22 17:37:49 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-08-22 17:37:49 -0400 |
| commit | 428cc8fc9c27de8a24e6bcfc426a11e7839cebbd (patch) | |
| tree | 16504e911597b083a30390682efe6094e3b7b235 /SelectiveWholeGenomeAmplification | |
| parent | d4ec5459d0fc141d20a4bbbf0a7dc40742e0372f (diff) | |
revamp filter_average_binding.py
Diffstat (limited to 'SelectiveWholeGenomeAmplification')
| -rwxr-xr-x | SelectiveWholeGenomeAmplification | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/SelectiveWholeGenomeAmplification b/SelectiveWholeGenomeAmplification index 8304387..b2b95ca 100755 --- a/SelectiveWholeGenomeAmplification +++ b/SelectiveWholeGenomeAmplification @@ -335,7 +335,7 @@ if [[ -n "$step_filters" ]] || [[ -n "$all" ]]; then check_non_empty "$ignore_all_mers_counts" "ignore all mers from file " echo " filtering mers that appear less frequently than the average binding site distance ($min_foreground_binding_average)" - filter_average_binding.py "$ignore_all_mers_counts" "$min_foreground_binding_average" < "$fg_counts" > "$average_binding" || exit 1 + filter_average_binding.py --fasta "$foreground" --minimum "$min_foreground_binding_average" --counts "$ignore_all_mers_counts" > "$average_binding" || exit 1 check_non_empty "$average_binding" "average binding" echo " filtering mers that are not in the melting range ($min_melting_temp-$max_melting_temp)" |