diff options
| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-25 16:33:36 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-25 16:33:36 -0400 |
| commit | 06fa848b90982ddcd4308bb88d70a0d5f11f785b (patch) | |
| tree | 472f8e8675a3b01060159bcf24cd1b2c35fb5d9e /src/select_mers.py | |
| parent | 55d58f92e388bbed44963565c5073c444ffa60b2 (diff) | |
add average binding filter
Diffstat (limited to 'src/select_mers.py')
| -rwxr-xr-x | src/select_mers.py | 9 |
1 files changed, 0 insertions, 9 deletions
diff --git a/src/select_mers.py b/src/select_mers.py index ef019c0..5bd6877 100755 --- a/src/select_mers.py +++ b/src/select_mers.py @@ -5,8 +5,6 @@ import os fg_mers = {} bg_mers = {} -min_mer_count = int(os.environ.get("min_mer_count", 0)); - if(len(sys.argv) == 3): fg_count_fn = sys.argv[1] bg_count_fn = sys.argv[2] @@ -59,13 +57,6 @@ def main(): (mer, count) = line.split() mers[mer] = int(count) - if min_mer_count >= 1: - for mer in fg_mers.keys(): - if(fg_mers[mer] < min_mer_count): - del fg_mers[mer] - if mer in bg_mers: - del bg_mers[mer] - for mer in bg_mers.keys(): if mer not in fg_mers: del bg_mers[mer] |