From 06fa848b90982ddcd4308bb88d70a0d5f11f785b Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Tue, 25 Mar 2014 16:33:36 -0400 Subject: add average binding filter --- src/select_mers.py | 9 --------- 1 file changed, 9 deletions(-) (limited to 'src/select_mers.py') diff --git a/src/select_mers.py b/src/select_mers.py index ef019c0..5bd6877 100755 --- a/src/select_mers.py +++ b/src/select_mers.py @@ -5,8 +5,6 @@ import os fg_mers = {} bg_mers = {} -min_mer_count = int(os.environ.get("min_mer_count", 0)); - if(len(sys.argv) == 3): fg_count_fn = sys.argv[1] bg_count_fn = sys.argv[2] @@ -59,13 +57,6 @@ def main(): (mer, count) = line.split() mers[mer] = int(count) - if min_mer_count >= 1: - for mer in fg_mers.keys(): - if(fg_mers[mer] < min_mer_count): - del fg_mers[mer] - if mer in bg_mers: - del bg_mers[mer] - for mer in bg_mers.keys(): if mer not in fg_mers: del bg_mers[mer] -- cgit v1.2.3