aboutsummaryrefslogtreecommitdiff
path: root/SelectiveWholeGenomeAmplification
diff options
context:
space:
mode:
authorCalvin Morrison <mutantturkey@gmail.com>2014-08-05 15:30:59 -0400
committerCalvin Morrison <mutantturkey@gmail.com>2014-08-05 15:30:59 -0400
commit972add88040cac2f0a969e99c533051be7220ccc (patch)
tree61fdc7302b143f780166b0914bd84dffb4b0fe91 /SelectiveWholeGenomeAmplification
parent765a73ed7bb055d11aea2627af8daa9cfc6d664b (diff)
bg ratio
Diffstat (limited to 'SelectiveWholeGenomeAmplification')
-rwxr-xr-xSelectiveWholeGenomeAmplification5
1 files changed, 3 insertions, 2 deletions
diff --git a/SelectiveWholeGenomeAmplification b/SelectiveWholeGenomeAmplification
index 23b14bc..7a3d46b 100755
--- a/SelectiveWholeGenomeAmplification
+++ b/SelectiveWholeGenomeAmplification
@@ -179,6 +179,9 @@ done
# sort score by the minimum or maximum value. acceptable parameters are min or max.
: ${sort_by="min"}
+# bg_ratio
+: ${min_bg_ratio=0}
+
export ignore_mers
export min_mer_range
export max_mer_range
@@ -194,8 +197,6 @@ export min_melting_temp
export fg_weight
export primer_weight
-
-echo
# check foreground and background
if [[ ! -f "$foreground" ]]; then
echo "Error: could not open foreground: $foreground"