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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-31 13:55:25 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-31 13:55:25 -0400 |
| commit | 425573f74f71a362b2a2cc810a14b82315e713f2 (patch) | |
| tree | e8824dd424851804f575afc023375afc6d90a873 /SelectiveGenomeAmplification | |
| parent | 5757c6cef5ea5187903c6af54b0b063ff7c4ec37 (diff) | |
This closes bug #19. adds variables into the scoring header for later reference
Diffstat (limited to 'SelectiveGenomeAmplification')
| -rwxr-xr-x | SelectiveGenomeAmplification | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/SelectiveGenomeAmplification b/SelectiveGenomeAmplification index 4b3c8dc..637ff2c 100755 --- a/SelectiveGenomeAmplification +++ b/SelectiveGenomeAmplification @@ -323,8 +323,8 @@ if [[ -n "$step_score" ]] || [[ -n "$all" ]]; then # output our sorted scores echo "sorting and outputting top $output_top_nb scores" echo "top scores output file: $output_directory/$current_run/top-scores" - head -n 1 $output_directory/$current_run/all-scores > $output_directory/$current_run/top-scores - tail -n +2 $output_directory/$current_run/all-scores | sort -r -t $'\t' -nk 3 | head -n $output_top_nb >> $output_directory/$current_run/top-scores + head -n 2 $output_directory/$current_run/all-scores > $output_directory/$current_run/top-scores + tail -n +3 $output_directory/$current_run/all-scores | sort -r -t $'\t' -nk 3 | head -n $output_top_nb >> $output_directory/$current_run/top-scores fi |