From 425573f74f71a362b2a2cc810a14b82315e713f2 Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Mon, 31 Mar 2014 13:55:25 -0400 Subject: This closes bug #19. adds variables into the scoring header for later reference --- SelectiveGenomeAmplification | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'SelectiveGenomeAmplification') diff --git a/SelectiveGenomeAmplification b/SelectiveGenomeAmplification index 4b3c8dc..637ff2c 100755 --- a/SelectiveGenomeAmplification +++ b/SelectiveGenomeAmplification @@ -323,8 +323,8 @@ if [[ -n "$step_score" ]] || [[ -n "$all" ]]; then # output our sorted scores echo "sorting and outputting top $output_top_nb scores" echo "top scores output file: $output_directory/$current_run/top-scores" - head -n 1 $output_directory/$current_run/all-scores > $output_directory/$current_run/top-scores - tail -n +2 $output_directory/$current_run/all-scores | sort -r -t $'\t' -nk 3 | head -n $output_top_nb >> $output_directory/$current_run/top-scores + head -n 2 $output_directory/$current_run/all-scores > $output_directory/$current_run/top-scores + tail -n +3 $output_directory/$current_run/all-scores | sort -r -t $'\t' -nk 3 | head -n $output_top_nb >> $output_directory/$current_run/top-scores fi -- cgit v1.2.3