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| author | Calvin Morrison <mutantturkey@gmail.com> | 2014-08-05 15:30:59 -0400 |
|---|---|---|
| committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-08-05 15:30:59 -0400 |
| commit | 972add88040cac2f0a969e99c533051be7220ccc (patch) | |
| tree | 61fdc7302b143f780166b0914bd84dffb4b0fe91 /README.md | |
| parent | 765a73ed7bb055d11aea2627af8daa9cfc6d664b (diff) | |
bg ratio
Diffstat (limited to 'README.md')
| -rw-r--r-- | README.md | 1 |
1 files changed, 1 insertions, 0 deletions
@@ -164,6 +164,7 @@ max\_mer\_distance | 5000 | maximum distance between mers in foreground min\_melting\_temp | 0° | minimum melting temp of mers max\_melting\_temp | 30° | maximum melting temp of mers min\_foreground\_binding\_average | 50000 | eliminate mers that appear less frequently than the average (length of foreground / # of occurrances) +min\_bg\_ratio | Not Enabled | eliminate mers where the background ration is less than the minimum ignore\_mers | Not Enabled | mers to explicitly ignore, space separated ex. ignore\_mers="ACAGTA ACCATAA ATATATAT" ignore\_all\_mers\_from\_files | Not Enabled | ignore any mers found in these files. space separated. output\_directory | $foreground\_$background/ | ex. if fg is Bacillus.fasta and bg is HumanGenome.fasta then folder would be $PWD/Bacillus.fasta\_HumanGenome\_output.fasta/ |