From 972add88040cac2f0a969e99c533051be7220ccc Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Tue, 5 Aug 2014 15:30:59 -0400 Subject: bg ratio --- README.md | 1 + 1 file changed, 1 insertion(+) (limited to 'README.md') diff --git a/README.md b/README.md index 0dbe2b5..b18b21a 100644 --- a/README.md +++ b/README.md @@ -164,6 +164,7 @@ max\_mer\_distance | 5000 | maximum distance between mers in foreground min\_melting\_temp | 0° | minimum melting temp of mers max\_melting\_temp | 30° | maximum melting temp of mers min\_foreground\_binding\_average | 50000 | eliminate mers that appear less frequently than the average (length of foreground / # of occurrances) +min\_bg\_ratio | Not Enabled | eliminate mers where the background ration is less than the minimum ignore\_mers | Not Enabled | mers to explicitly ignore, space separated ex. ignore\_mers="ACAGTA ACCATAA ATATATAT" ignore\_all\_mers\_from\_files | Not Enabled | ignore any mers found in these files. space separated. output\_directory | $foreground\_$background/ | ex. if fg is Bacillus.fasta and bg is HumanGenome.fasta then folder would be $PWD/Bacillus.fasta\_HumanGenome\_output.fasta/ -- cgit v1.2.3