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author | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-31 16:31:15 -0400 |
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committer | Calvin Morrison <mutantturkey@gmail.com> | 2014-03-31 16:31:15 -0400 |
commit | 38bb1f3a1303e2f73ff1c939bf63b5108182b440 (patch) | |
tree | b16e222d943fa96d6e8e22964974d6a34a02730a /README.md | |
parent | 48e071c3c4bdb8d9d9227ef05030b9af4395f437 (diff) |
add UI for scorign func, update doc and varaibles
Diffstat (limited to 'README.md')
-rw-r--r-- | README.md | 4 |
1 files changed, 2 insertions, 2 deletions
@@ -153,7 +153,7 @@ max\_consecutive\_binding | 4 | The maximum number of consecutive binding nucleo fg\_weight | 0 | How much extra weight to give higher frequency mers in fg. see "equations" (between 0 and 1) primer\_weight | 0 | How much extra weight to give to sets with a higher number of primers. (between 0 and 1) output\_top\_nb | 10000 | How many scores do you want to output in your sorted output file? -======= +score\_func | Not Enabled | see the [custom scoring](#custom-scoring-function) section ## Equations @@ -203,7 +203,7 @@ This is a security hole. you can specify it like any other parameter like so: # the default function - scoring\_func="(nb_primers**primer_weight) * (fg_mean_dist * fg_std_dist) / bg_ratio" SelectiveGenomeAmplification.... + score_func="(nb_primers**primer_weight) * (fg_mean_dist * fg_std_dist) / bg_ratio" SelectiveGenomeAmplification.... You need to use **valid** python code. |