From 38bb1f3a1303e2f73ff1c939bf63b5108182b440 Mon Sep 17 00:00:00 2001 From: Calvin Morrison Date: Mon, 31 Mar 2014 16:31:15 -0400 Subject: add UI for scorign func, update doc and varaibles --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'README.md') diff --git a/README.md b/README.md index 5cfce11..6ef2f2e 100644 --- a/README.md +++ b/README.md @@ -153,7 +153,7 @@ max\_consecutive\_binding | 4 | The maximum number of consecutive binding nucleo fg\_weight | 0 | How much extra weight to give higher frequency mers in fg. see "equations" (between 0 and 1) primer\_weight | 0 | How much extra weight to give to sets with a higher number of primers. (between 0 and 1) output\_top\_nb | 10000 | How many scores do you want to output in your sorted output file? -======= +score\_func | Not Enabled | see the [custom scoring](#custom-scoring-function) section ## Equations @@ -203,7 +203,7 @@ This is a security hole. you can specify it like any other parameter like so: # the default function - scoring\_func="(nb_primers**primer_weight) * (fg_mean_dist * fg_std_dist) / bg_ratio" SelectiveGenomeAmplification.... + score_func="(nb_primers**primer_weight) * (fg_mean_dist * fg_std_dist) / bg_ratio" SelectiveGenomeAmplification.... You need to use **valid** python code. -- cgit v1.2.3