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<tool id="multifasta" name="Multifasta">
<description>Get Abundances on Multiple Files</description>
<command interpreter="bash">multifasta_to_otu -k $kmer -s $db -f <( echo
#for $input in $inputs:
"${input}"
#end for
| xargs -n 1 ) -o $output</command>
<inputs>
<param name="inputs" multiple="true" type="data" format="fasta" label="input fasta"/>
<param name="db" type="data" format="data" label="trained database"/>
<param name="lambda" type="integer" size="6" value="10000" label="lambda" help="default 10000"/>
<param name="kmer" type="integer" size="2" value="6" label="What mer size to use?" help="range 6 - 12"/>
</inputs>
<outputs>
<data name="output" format="tabular"/>
</outputs>
<help>
</help>
</tool>
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