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// count the sequences in a fasta file
unsigned long long count_sequences(const char *filename);
// normalize a matrix by dividing each element by the sum of it's column
void normalize_matrix(double *matrix, int height, int width);
// load a sensing matrix
struct matrix *load_sensing_matrix(const char *filename);
// add header and normalize count matrix
double *setup_count_matrix(char *filename, unsigned long long kmer, unsigned long long lambda, unsigned long long width);
// add header and normalize sensing matrix
struct matrix *setup_sensing_matrix(char *filename, unsigned long long kmer, unsigned long long lambda, unsigned long long width);
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