| ofs | hex dump | ascii |
|---|---|---|
| 0000 | 62 30 56 49 4d 20 37 2e 33 00 00 00 00 10 00 00 e6 45 0e 52 27 01 60 01 1a 0b 00 00 63 61 6c 76 | b0VIM.7.3........E.R'.`.....calv |
| 0020 | 69 6e 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | in.............................. |
| 0040 | 00 00 00 00 62 61 72 6e 61 62 61 73 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ....barnabas.................... |
| 0060 | 00 00 00 00 00 00 00 00 00 00 00 00 7e 63 61 6c 76 69 6e 2f 73 72 63 2f 71 75 69 6b 72 2f 64 6f | ............~calvin/src/quikr/do |
| 0080 | 63 2f 6d 61 74 6c 61 62 2e 6d 61 72 6b 64 6f 77 6e 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | c/matlab.markdown............... |
| 00a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 00c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 00e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0100 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0120 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0140 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0160 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0180 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 01a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 01c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 01e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0200 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0220 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0240 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0260 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0280 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 02a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 02c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 02e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0300 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0320 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0340 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0360 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0380 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 03a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 03c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 03e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0d 00 33 32 31 30 00 00 00 00 23 22 21 20 13 12 55 00 | ................3210....#"!...U. |
| 0400 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0420 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0440 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0460 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0480 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 04a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 04c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 04e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0500 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0520 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0540 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0560 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0580 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 05a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 05c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 05e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0600 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0620 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0640 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0660 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0680 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 06a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 06c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 06e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0700 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0720 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0740 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0760 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0780 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 07a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 07c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 07e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0800 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0820 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0840 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0860 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0880 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 08a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 08c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 08e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0900 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0920 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0940 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0960 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0980 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 09a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 09c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 09e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0a00 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0a20 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0a40 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0a60 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0a80 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0aa0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0ac0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0ae0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0b00 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0b20 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0b40 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0b60 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0b80 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0ba0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0bc0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0be0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0c00 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0c20 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0c40 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0c60 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0c80 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0ca0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0cc0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0ce0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0d00 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0d20 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0d40 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0d60 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0d80 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0da0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0dc0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0de0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0e00 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0e20 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0e40 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0e60 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0e80 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0ea0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0ec0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0ee0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0f00 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0f20 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0f40 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0f60 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0f80 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0fa0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0fc0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 0fe0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1000 | 74 70 02 00 7f 00 00 00 02 00 00 00 00 00 00 00 72 00 00 00 00 00 00 00 01 00 00 00 00 00 00 00 | tp..............r............... |
| 1020 | 01 00 00 00 00 00 00 00 03 00 00 00 00 00 00 00 2c 00 00 00 00 00 00 00 73 00 00 00 00 00 00 00 | ................,.......s....... |
| 1040 | 01 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1060 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1080 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 10a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 10c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 10e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1100 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1120 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1140 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1160 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1180 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 11a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 11c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 11e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1200 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1220 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1240 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1260 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1280 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 12a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 12c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 12e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1300 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1320 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1340 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1360 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1380 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 13a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 13c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 13e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1400 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1420 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1440 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1460 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1480 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 14a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 14c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 14e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1500 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1520 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1540 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1560 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1580 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 15a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 15c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 15e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1600 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1620 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1640 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1660 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1680 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 16a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 16c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 16e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1700 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1720 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1740 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1760 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1780 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 17a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 17c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 17e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1800 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1820 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1840 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1860 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1880 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 18a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 18c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 18e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1900 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1920 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1940 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1960 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1980 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 19a0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 19c0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 19e0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1a00 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1a20 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1a40 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1a60 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1a80 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1aa0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1ac0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1ae0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1b00 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1b20 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1b40 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1b60 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1b80 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1ba0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1bc0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1be0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1c00 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1c20 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1c40 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1c60 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1c80 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1ca0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1cc0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1ce0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1d00 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1d20 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1d40 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1d60 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1d80 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1da0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1dc0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1de0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1e00 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1e20 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1e40 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1e60 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1e80 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1ea0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1ec0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1ee0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1f00 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1f20 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1f40 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1f60 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1f80 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1fa0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1fc0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 1fe0 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 2000 | 61 64 00 00 2e 00 00 00 12 02 00 00 00 10 00 00 72 00 00 00 00 00 00 00 de 0f 00 00 93 0f 00 00 | ad..............r............... |
| 2020 | 6e 0f 00 00 6d 0f 00 00 1d 0f 00 00 cd 0e 00 00 82 0e 00 00 81 0e 00 00 68 0e 00 00 63 0e 00 00 | n...m...................h...c... |
| 2040 | 62 0e 00 00 4e 0e 00 00 ff 0d 00 00 b9 0d 00 00 b8 0d 00 00 a0 0d 00 00 9f 0d 00 00 72 0d 00 00 | b...N.......................r... |
| 2060 | 44 0d 00 00 43 0d 00 00 09 0d 00 00 08 0d 00 00 be 0c 00 00 6d 0c 00 00 1e 0c 00 00 00 0c 00 00 | D...C...............m........... |
| 2080 | ff 0b 00 00 df 0b 00 00 de 0b 00 00 bf 0b 00 00 be 0b 00 00 70 0b 00 00 27 0b 00 00 1e 0b 00 00 | ....................p...'....... |
| 20a0 | 1d 0b 00 00 ea 0a 00 00 e9 0a 00 00 e8 0a 00 00 a4 0a 00 00 a3 0a 00 00 83 0a 00 00 82 0a 00 00 | ................................ |
| 20c0 | 55 0a 00 00 54 0a 00 00 1f 0a 00 00 1e 0a 00 00 ff 09 00 00 fe 09 00 00 d7 09 00 00 d6 09 00 00 | U...T........................... |
| 20e0 | 85 09 00 00 36 09 00 00 01 09 00 00 00 09 00 00 c4 08 00 00 c3 08 00 00 9b 08 00 00 9a 08 00 00 | ....6........................... |
| 2100 | 70 08 00 00 6f 08 00 00 1e 08 00 00 d1 07 00 00 c9 07 00 00 c8 07 00 00 a7 07 00 00 a6 07 00 00 | p...o........................... |
| 2120 | 73 07 00 00 22 07 00 00 21 07 00 00 fe 06 00 00 fd 06 00 00 ca 06 00 00 c9 06 00 00 86 06 00 00 | s..."...!....................... |
| 2140 | 85 06 00 00 40 06 00 00 3f 06 00 00 1e 06 00 00 1d 06 00 00 14 06 00 00 13 06 00 00 ce 05 00 00 | ....@...?....................... |
| 2160 | cd 05 00 00 92 05 00 00 91 05 00 00 46 05 00 00 f7 04 00 00 d3 04 00 00 d2 04 00 00 c0 04 00 00 | ............F................... |
| 2180 | bf 04 00 00 92 04 00 00 41 04 00 00 10 04 00 00 0f 04 00 00 ca 03 00 00 c9 03 00 00 ab 03 00 00 | ........A....................... |
| 21a0 | aa 03 00 00 75 03 00 00 74 03 00 00 31 03 00 00 30 03 00 00 10 03 00 00 0f 03 00 00 e2 02 00 00 | ....u...t...1...0............... |
| 21c0 | e1 02 00 00 ac 02 00 00 ab 02 00 00 8c 02 00 00 8b 02 00 00 64 02 00 00 63 02 00 00 12 02 00 00 | ....................d...c....... |
| 21e0 | 11 02 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 | ................................ |
| 2200 | 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 54 68 69 73 20 63 65 6c 6c 20 61 72 72 61 | ..................This.cell.arra |
| 2220 | 79 20 63 6f 6e 74 61 69 6e 73 20 74 68 65 20 28 75 6e 73 6f 72 74 65 64 29 20 6e 61 6d 65 73 20 | y.contains.the.(unsorted).names. |
| 2240 | 6f 66 20 74 68 65 20 72 65 63 6f 6e 73 74 72 75 63 74 65 64 20 73 65 71 75 65 6e 63 65 73 20 61 | of.the.reconstructed.sequences.a |
| 2260 | 6e 64 00 00 20 20 20 20 6e 61 6d 65 73 63 65 6c 6c 3d 68 65 61 64 65 72 73 28 6e 6f 6e 7a 65 72 | nd......namescell=headers(nonzer |
| 2280 | 6f 65 6e 74 72 69 65 73 29 3b 00 00 47 65 74 20 74 68 65 20 6e 61 6d 65 73 20 6f 66 20 74 68 65 | oentries);..Get.the.names.of.the |
| 22a0 | 20 73 65 71 75 65 6e 63 65 73 00 00 20 20 20 20 70 72 6f 70 6f 72 74 69 6f 6e 73 63 65 6c 6c 3d | .sequences......proportionscell= |
| 22c0 | 6e 75 6d 32 63 65 6c 6c 28 78 73 74 61 72 28 6e 6f 6e 7a 65 72 6f 65 6e 74 72 69 65 73 29 29 3b | num2cell(xstar(nonzeroentries)); |
| 22e0 | 00 00 43 6f 6e 76 65 72 74 20 74 68 65 20 63 6f 6e 63 65 6e 74 72 61 74 69 6f 6e 73 20 69 6e 74 | ..Convert.the.concentrations.int |
| 2300 | 6f 20 61 20 63 65 6c 6c 20 61 72 72 61 79 00 00 20 20 20 20 6e 6f 6e 7a 65 72 6f 65 6e 74 72 69 | o.a.cell.array......nonzeroentri |
| 2320 | 65 73 3d 66 69 6e 64 28 78 73 74 61 72 29 3b 00 00 47 65 74 20 74 68 65 20 69 6e 64 69 63 65 73 | es=find(xstar);..Get.the.indices |
| 2340 | 20 6f 66 20 74 68 65 20 73 65 71 75 65 6e 63 65 73 20 71 75 69 6b 72 20 70 72 65 64 69 63 74 73 | .of.the.sequences.quikr.predicts |
| 2360 | 20 61 72 65 20 69 6e 20 79 6f 75 72 20 73 61 6d 70 6c 65 00 00 20 20 20 20 5b 68 65 61 64 65 72 | .are.in.your.sample......[header |
| 2380 | 73 2c 7e 5d 3d 66 61 73 74 61 72 65 61 64 28 74 72 61 69 6e 69 6e 67 64 61 74 61 62 61 73 65 66 | s,~]=fastaread(trainingdatabasef |
| 23a0 | 69 6c 65 6e 61 6d 65 29 3b 00 00 52 65 61 64 20 69 6e 20 74 68 65 20 74 72 61 69 6e 69 6e 67 20 | ilename);..Read.in.the.training. |
| 23c0 | 64 61 74 61 62 61 73 65 00 00 20 20 20 20 78 73 74 61 72 3d 71 75 69 6b 72 43 75 73 74 6f 6d 54 | database......xstar=quikrCustomT |
| 23e0 | 72 61 69 6e 65 64 28 74 72 61 69 6e 69 6e 67 6d 61 74 72 69 78 2c 66 61 73 74 61 66 69 6c 65 6e | rained(trainingmatrix,fastafilen |
| 2400 | 61 6d 65 2c 6b 2c 6c 61 6d 62 64 61 29 3b 00 00 74 68 61 74 20 61 72 65 20 70 72 65 64 69 63 74 | ame,k,lambda);..that.are.predict |
| 2420 | 65 64 20 74 6f 20 62 65 20 70 72 65 73 65 6e 74 20 69 6e 20 79 6f 75 72 20 73 61 6d 70 6c 65 3a | ed.to.be.present.in.your.sample: |
| 2440 | 00 41 67 61 69 6e 2c 20 78 73 74 61 72 20 69 73 20 6f 6e 20 74 68 65 20 73 61 6d 65 20 62 61 73 | .Again,.xstar.is.on.the.same.bas |
| 2460 | 69 73 20 61 73 20 74 68 65 20 54 72 61 69 6e 69 6e 67 4d 61 74 72 69 78 2c 20 73 6f 20 74 6f 20 | is.as.the.TrainingMatrix,.so.to. |
| 2480 | 67 65 74 20 74 68 65 20 73 65 71 75 65 6e 63 65 73 00 47 65 74 20 74 68 65 20 70 72 65 64 69 63 | get.the.sequences.Get.the.predic |
| 24a0 | 74 65 64 20 72 65 63 6f 6e 73 74 72 75 63 74 69 6f 6e 20 66 72 65 71 75 65 6e 63 69 65 73 00 00 | ted.reconstruction.frequencies.. |
| 24c0 | 20 20 20 20 6c 61 6d 62 64 61 3d 31 30 30 30 30 3b 00 00 61 6e 64 20 63 6f 6e 64 69 74 69 6f 6e | ....lambda=10000;..and.condition |
| 24e0 | 20 6f 66 20 74 68 65 20 54 72 61 69 6e 69 6e 67 4d 61 74 72 69 78 00 63 6c 6f 73 65 72 20 74 6f | .of.the.TrainingMatrix.closer.to |
| 2500 | 20 61 63 74 75 61 6c 20 63 6f 6e 63 65 6e 74 72 61 74 69 6f 6e 73 29 2c 20 74 68 69 73 20 64 65 | .actual.concentrations),.this.de |
| 2520 | 70 65 6e 64 73 20 6f 6e 20 6b 2d 6d 65 72 20 73 69 7a 65 20 70 69 63 6b 65 64 2c 20 61 6c 73 6f | pends.on.k-mer.size.picked,.also |
| 2540 | 20 73 69 7a 65 00 50 69 63 6b 20 61 20 6c 61 6d 62 64 61 20 28 6c 61 72 67 65 72 20 6c 61 6d 62 | .size.Pick.a.lambda.(larger.lamb |
| 2560 | 64 61 20 2d 3e 20 74 68 65 6f 72 65 74 69 63 61 6c 6c 79 20 70 72 65 64 69 63 74 65 64 20 63 6f | da.->.theoretically.predicted.co |
| 2580 | 6e 63 65 6e 74 72 61 74 69 6f 6e 73 20 61 72 65 00 00 20 20 20 20 74 72 61 69 6e 69 6e 67 6d 61 | ncentrations.are......trainingma |
| 25a0 | 74 72 69 78 3d 71 75 69 6b 72 54 72 61 69 6e 28 74 72 61 69 6e 69 6e 67 64 61 74 61 62 61 73 65 | trix=quikrTrain(trainingdatabase |
| 25c0 | 66 69 6c 65 6e 61 6d 65 2c 6b 29 3b 00 00 54 68 69 73 20 77 69 6c 6c 20 72 65 74 75 72 6e 20 74 | filename,k);..This.will.return.t |
| 25e0 | 68 65 20 74 72 61 69 6e 69 6e 67 20 64 61 74 61 62 61 73 65 20 74 68 65 6e 20 74 6f 20 64 6f 20 | he.training.database.then.to.do. |
| 2600 | 74 68 65 20 72 65 63 6f 6e 73 74 72 75 63 74 69 6f 6e 00 00 20 20 20 20 6b 3d 36 3b 00 00 50 69 | the.reconstruction......k=6;..Pi |
| 2620 | 63 6b 20 61 20 6b 2d 6d 65 72 20 73 69 7a 65 20 28 74 79 70 69 63 61 6c 6c 79 20 36 20 29 00 00 | ck.a.k-mer.size.(typically.6.).. |
| 2640 | 20 20 20 20 74 72 61 69 6e 69 6e 67 64 61 74 61 62 61 73 65 66 69 6c 65 6e 61 6d 65 3d 27 2f 70 | ....trainingdatabasefilename='/p |
| 2660 | 61 74 68 2f 74 6f 2f 79 6f 75 72 2f 74 72 61 69 6e 69 6e 67 64 61 74 61 62 61 73 65 2e 66 61 73 | ath/to/your/trainingdatabase.fas |
| 2680 | 74 61 27 3b 00 00 46 75 6c 6c 20 70 61 74 68 20 74 6f 20 74 68 65 20 46 41 53 54 41 20 66 69 6c | ta';..Full.path.to.the.FASTA.fil |
| 26a0 | 65 20 79 6f 75 20 77 69 73 68 20 74 6f 20 75 73 65 20 61 73 20 61 20 74 72 61 69 6e 69 6e 67 20 | e.you.wish.to.use.as.a.training. |
| 26c0 | 64 61 74 61 62 61 73 65 00 00 20 20 20 20 66 61 73 74 61 66 69 6c 65 6e 61 6d 65 3d 27 2f 70 61 | database......fastafilename='/pa |
| 26e0 | 74 68 2f 74 6f 2f 79 6f 75 72 2f 66 61 73 74 61 66 69 6c 65 2e 66 61 73 74 61 27 3b 00 00 46 75 | th/to/your/fastafile.fasta';..Fu |
| 2700 | 6c 6c 20 70 61 74 68 20 6e 61 6d 65 20 74 6f 20 79 6f 75 72 20 64 61 74 61 20 66 69 6c 65 3a 20 | ll.path.name.to.your.data.file:. |
| 2720 | 00 00 49 66 20 79 6f 75 20 77 6f 75 6c 64 20 6c 69 6b 65 20 74 6f 20 75 73 65 20 61 20 63 75 73 | ..If.you.would.like.to.use.a.cus |
| 2740 | 74 6f 6d 20 74 72 61 69 6e 69 6e 67 20 64 61 74 61 62 61 73 65 2c 20 66 6f 6c 6c 6f 77 20 74 68 | tom.training.database,.follow.th |
| 2760 | 65 20 66 6f 6c 6c 6f 77 69 6e 67 20 73 74 65 70 73 3a 00 23 23 23 20 55 73 69 6e 67 20 51 75 69 | e.following.steps:.###.Using.Qui |
| 2780 | 6b 72 20 57 69 74 68 20 41 20 43 75 73 74 6f 6d 20 54 72 61 69 6e 65 64 20 44 61 74 61 62 61 73 | kr.With.A.Custom.Trained.Databas |
| 27a0 | 65 20 23 23 23 00 00 20 20 20 20 6e 61 6d 65 73 61 6e 64 70 72 6f 70 6f 72 74 69 6f 6e 73 7b 31 | e.###......namesandproportions{1 |
| 27c0 | 3a 32 2c 69 6e 64 7d 00 00 73 61 6d 70 6c 65 2e 00 6a 75 73 74 20 74 68 61 74 20 70 68 79 6c 75 | :2,ind}..sample..just.that.phylu |
| 27e0 | 6d 2f 63 6c 61 73 73 2f 6f 72 64 65 72 2f 66 61 6d 69 6c 79 2f 67 65 6e 75 73 20 74 68 69 73 20 | m/class/order/family/genus.this. |
| 2800 | 73 70 65 63 69 65 73 20 62 65 6c 6f 6e 67 73 20 74 6f 20 69 73 20 69 6e 20 79 6f 75 72 00 4e 6f | species.belongs.to.is.in.your.No |
| 2820 | 74 65 20 74 68 61 74 20 74 68 69 73 20 64 6f 65 73 20 6e 6f 74 20 69 6d 70 6c 79 20 74 68 69 73 | te.that.this.does.not.imply.this |
| 2840 | 20 73 70 65 63 69 66 69 63 20 73 74 72 61 69 6e 20 6f 72 20 73 70 65 63 69 65 73 20 69 73 20 69 | .specific.strain.or.species.is.i |
| 2860 | 6e 20 79 6f 75 72 20 73 61 6d 70 6c 65 2c 00 00 20 20 20 20 5b 76 61 6c 2c 69 6e 64 5d 3d 6d 61 | n.your.sample,......[val,ind]=ma |
| 2880 | 78 28 78 73 74 61 72 28 6e 6f 6e 7a 65 72 6f 65 6e 74 72 69 65 73 29 29 3b 00 00 47 65 74 20 74 | x(xstar(nonzeroentries));..Get.t |
| 28a0 | 68 65 20 6d 61 78 69 6d 75 6d 20 76 61 6c 75 65 20 61 6e 64 20 69 74 27 73 20 70 6f 73 69 74 69 | he.maximum.value.and.it's.positi |
| 28c0 | 6f 6e 00 00 20 20 20 20 6e 61 6d 65 73 61 6e 64 70 72 6f 70 6f 72 74 69 6f 6e 73 3d 7b 6e 61 6d | on......namesandproportions={nam |
| 28e0 | 65 73 63 65 6c 6c 7b 3a 7d 3b 20 70 72 6f 70 6f 72 74 69 6f 6e 73 63 65 6c 6c 7b 3a 7d 7d 3b 00 | escell{:};.proportionscell{:}};. |
| 2900 | 00 77 68 69 63 68 20 73 65 71 75 65 6e 63 65 20 69 73 20 74 68 65 20 6d 6f 73 74 20 61 62 75 6e | .which.sequence.is.the.most.abun |
| 2920 | 64 61 6e 74 20 69 6e 20 79 6f 75 72 20 6d 69 78 74 75 72 65 3a 00 74 68 65 69 72 20 63 6f 6e 63 | dant.in.your.mixture:.their.conc |
| 2940 | 65 6e 74 72 61 74 69 6f 6e 73 20 28 69 6e 20 74 68 65 20 66 69 72 73 74 20 61 6e 64 20 73 65 63 | entrations.(in.the.first.and.sec |
| 2960 | 6f 6e 64 20 63 6f 6c 75 6d 6e 73 20 72 65 73 70 65 63 74 69 76 65 6c 79 29 20 73 6f 20 74 6f 20 | ond.columns.respectively).so.to. |
| 2980 | 66 69 6e 64 00 54 68 69 73 20 63 65 6c 6c 20 61 72 72 61 79 20 63 6f 6e 74 61 69 6e 73 20 74 68 | find.This.cell.array.contains.th |
| 29a0 | 65 20 28 75 6e 73 6f 72 74 65 64 29 20 6e 61 6d 65 73 20 6f 66 20 74 68 65 20 72 65 63 6f 6e 73 | e.(unsorted).names.of.the.recons |
| 29c0 | 74 72 75 63 74 65 64 20 73 65 71 75 65 6e 63 65 73 20 61 6e 64 00 00 20 20 20 20 6e 61 6d 65 73 | tructed.sequences.and......names |
| 29e0 | 63 65 6c 6c 3d 68 65 61 64 65 72 73 28 6e 6f 6e 7a 65 72 6f 65 6e 74 72 69 65 73 29 3b 00 00 47 | cell=headers(nonzeroentries);..G |
| 2a00 | 65 74 20 74 68 65 20 6e 61 6d 65 73 20 6f 66 20 74 68 65 20 73 65 71 75 65 6e 63 65 73 00 00 20 | et.the.names.of.the.sequences... |
| 2a20 | 20 20 20 70 72 6f 70 6f 72 74 69 6f 6e 73 63 65 6c 6c 3d 6e 75 6d 32 63 65 6c 6c 28 78 73 74 61 | ...proportionscell=num2cell(xsta |
| 2a40 | 72 28 6e 6f 6e 7a 65 72 6f 65 6e 74 72 69 65 73 29 29 3b 00 00 43 6f 6e 76 65 72 74 20 74 68 65 | r(nonzeroentries));..Convert.the |
| 2a60 | 20 63 6f 6e 63 65 6e 74 72 61 74 69 6f 6e 73 20 69 6e 74 6f 20 61 20 63 65 6c 6c 20 61 72 72 61 | .concentrations.into.a.cell.arra |
| 2a80 | 79 00 00 20 20 20 20 6e 6f 6e 7a 65 72 6f 65 6e 74 72 69 65 73 3d 66 69 6e 64 28 78 73 74 61 72 | y......nonzeroentries=find(xstar |
| 2aa0 | 29 3b 00 00 47 65 74 20 74 68 65 20 69 6e 64 69 63 69 65 73 20 6f 66 20 74 68 65 20 73 65 71 75 | );..Get.the.indicies.of.the.sequ |
| 2ac0 | 65 6e 63 65 73 20 71 75 69 6b 72 20 70 72 65 64 69 63 74 73 20 61 72 65 20 69 6e 20 79 6f 75 72 | ences.quikr.predicts.are.in.your |
| 2ae0 | 20 73 61 6d 70 6c 65 00 00 00 20 20 20 20 5b 68 65 61 64 65 72 73 2c 7e 5d 3d 66 61 73 74 61 72 | .sample.......[headers,~]=fastar |
| 2b00 | 65 61 64 28 27 74 72 61 69 6e 73 65 74 37 5c 5f 31 31 32 30 31 31 2e 66 61 27 29 3b 00 00 4d 61 | ead('trainset7\_112011.fa');..Ma |
| 2b20 | 74 6c 61 62 2e 5f 00 69 6e 63 6c 75 64 65 64 20 69 6e 20 74 68 65 20 51 75 69 6b 72 20 64 6f 77 | tlab._.included.in.the.Quikr.dow |
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| 2b80 | 69 73 20 6e 6f 74 20 62 79 20 64 65 66 61 75 6c 74 20 69 6e 63 6c 75 64 65 64 20 69 6e 20 4f 63 | is.not.by.default.included.in.Oc |
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| 2be0 | 20 20 20 78 73 74 61 72 3d 71 75 69 6b 72 28 66 61 73 74 61 66 69 6c 65 6e 61 6d 65 29 3b 00 00 | ...xstar=quikr(fastafilename);.. |
| 2c00 | 74 6f 20 62 65 20 70 72 65 73 65 6e 74 20 69 6e 20 79 6f 75 72 20 73 61 6d 70 6c 65 3a 00 73 61 | to.be.present.in.your.sample:.sa |
| 2c20 | 6d 65 20 62 61 73 69 73 20 61 73 20 74 72 61 69 6e 73 65 74 37 5c 5f 31 31 32 30 31 31 2e 66 61 | me.basis.as.trainset7\_112011.fa |
| 2c40 | 2c 20 73 6f 20 74 6f 20 67 65 74 20 74 68 65 20 73 65 71 75 65 6e 63 65 73 20 74 68 61 74 20 61 | ,.so.to.get.the.sequences.that.a |
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| 2c80 | 72 61 69 6e 73 65 74 37 5c 5f 31 31 32 30 31 31 2e 66 61 20 66 72 6f 6d 20 52 44 50 20 76 65 72 | rainset7\_112011.fa.from.RDP.ver |
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| 2ce0 | 73 74 72 75 63 74 69 6f 6e 20 66 72 65 71 75 65 6e 63 69 65 73 20 75 73 69 6e 67 20 74 68 65 20 | struction.frequencies.using.the. |
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| 2d60 | 6f 20 79 6f 75 72 20 64 61 74 61 20 66 69 6c 65 3a 00 23 23 23 20 55 73 69 6e 67 20 51 75 69 6b | o.your.data.file:.###.Using.Quik |
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| 2da0 | 20 20 20 20 63 64 20 71 75 69 6b 72 2f 73 72 63 2f 6d 61 74 6c 61 62 00 00 6d 61 6b 65 20 73 75 | ....cd.quikr/src/matlab..make.su |
| 2dc0 | 72 65 20 74 68 61 74 20 79 6f 75 20 61 72 65 20 69 6e 20 74 68 65 20 71 75 69 6b 72 27 73 20 6d | re.that.you.are.in.the.quikr's.m |
| 2de0 | 61 74 6c 61 62 20 64 69 72 65 63 74 6f 72 79 20 28 73 72 63 2f 6d 61 74 6c 61 62 2f 29 3a 00 54 | atlab.directory.(src/matlab/):.T |
| 2e00 | 68 69 73 20 69 73 20 61 6e 20 65 78 61 6d 70 6c 65 20 6f 66 20 68 6f 77 20 74 6f 20 72 75 6e 20 | his.is.an.example.of.how.to.run. |
| 2e20 | 51 75 69 6b 72 2e 20 42 65 66 6f 72 65 20 79 6f 75 20 74 72 79 20 74 68 65 20 65 78 61 6d 70 6c | Quikr..Before.you.try.the.exampl |
| 2e40 | 65 20 70 6c 65 61 73 65 20 6d 61 6b 65 00 23 23 20 51 75 69 6b 72 20 45 78 61 6d 70 6c 65 20 23 | e.please.make.##.Quikr.Example.# |
| 2e60 | 23 00 00 20 20 20 20 00 20 20 20 20 77 68 69 63 68 20 67 65 6e 65 72 61 74 65 5f 6b 6d 65 72 73 | #...........which.generate_kmers |
| 2e80 | 00 00 74 68 65 20 71 75 69 6b 72 20 70 72 6f 6a 65 63 74 2c 20 69 74 20 77 69 6c 6c 20 61 6c 72 | ..the.quikr.project,.it.will.alr |
| 2ea0 | 65 61 64 79 20 62 65 20 69 6e 73 74 61 6c 6c 65 64 2e 20 54 6f 20 74 65 73 74 20 74 68 69 73 20 | eady.be.installed..To.test.this. |
| 2ec0 | 79 6f 75 20 63 61 6e 20 72 75 6e 3a 00 74 68 69 73 20 66 69 6c 65 20 69 73 20 61 76 61 69 6c 61 | you.can.run:.this.file.is.availa |
| 2ee0 | 62 6c 65 20 69 6e 20 74 68 65 20 73 72 63 2f 70 79 74 68 6f 6e 2f 20 64 69 72 65 63 74 6f 72 79 | ble.in.the.src/python/.directory |
| 2f00 | 2e 20 49 66 20 79 6f 75 20 75 73 65 20 6d 61 6b 65 20 74 6f 20 69 6e 73 74 61 6c 6c 00 59 6f 75 | ..If.you.use.make.to.install.You |
| 2f20 | 20 77 69 6c 6c 20 6e 65 65 64 20 74 6f 20 69 6e 73 74 61 6c 6c 20 74 68 65 20 67 65 6e 65 72 61 | .will.need.to.install.the.genera |
| 2f40 | 74 65 5f 6b 6d 65 72 73 20 74 6f 6f 6c 20 69 6e 74 6f 20 79 6f 75 72 20 24 50 41 54 48 20 28 65 | te_kmers.tool.into.your.$PATH.(e |
| 2f60 | 67 20 2f 75 73 72 2f 62 69 6e 2f 29 00 00 4f 63 74 61 76 65 20 76 65 72 73 69 6f 6e 20 77 69 6c | g./usr/bin/)..Octave.version.wil |
| 2f80 | 6c 20 72 75 6e 20 6d 75 63 68 20 73 6c 6f 77 65 72 2e 00 54 68 65 20 51 75 69 6b 72 20 69 6d 70 | l.run.much.slower..The.Quikr.imp |
| 2fa0 | 6c 65 6d 65 6e 74 61 74 69 6f 6e 20 77 6f 72 6b 73 20 69 6e 20 4d 61 74 6c 61 62 20 61 6e 64 20 | lementation.works.in.Matlab.and. |
| 2fc0 | 61 6c 73 6f 20 77 6f 72 6b 73 20 69 6e 20 4f 63 74 61 76 65 2c 20 62 75 74 20 74 68 65 00 23 20 | also.works.in.Octave,.but.the.#. |
| 2fe0 | 51 75 69 6b 72 27 73 20 4d 61 74 6c 61 62 20 49 6d 70 6c 65 6d 65 6e 74 61 74 69 6f 6e 20 23 00 | Quikr's.Matlab.Implementation.#. |
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| 38e0 | 00 00 20 20 20 20 6d 61 6b 65 5f 33 64 5f 70 6c 6f 74 73 2e 70 79 20 2d 69 20 3c 71 75 69 6b 72 | ......make_3d_plots.py.-i.<quikr |
| 3900 | 5f 6f 74 75 5f 70 72 6f 6a 65 63 74 5f 6e 61 6d 65 3e 5f 77 65 69 67 68 74 65 64 2e 74 78 74 20 | _otu_project_name>_weighted.txt. |
| 3920 | 2d 6f 20 3c 33 64 5f 70 63 6f 61 5f 70 6c 6f 74 64 69 72 65 63 74 6f 72 79 3e 20 2d 6d 20 3c 71 | -o.<3d_pcoa_plotdirectory>.-m.<q |
| 3940 | 69 69 6d 65 5f 6d 65 74 61 64 61 74 61 5f 66 69 6c 65 3e 00 20 20 20 20 00 20 20 20 20 70 72 69 | iime_metadata_file>..........pri |
| 3960 | 6e 63 69 70 61 6c 5f 63 6f 6f 72 64 69 6e 61 74 65 73 2e 70 79 20 2d 69 20 62 65 74 61 5f 64 69 | ncipal_coordinates.py.-i.beta_di |
| 3980 | 76 2f 77 65 69 67 68 74 65 64 5f 75 6e 69 66 72 61 63 5f 3c 71 75 69 6b 72 5f 6f 74 75 3e 2e 74 | v/weighted_unifrac_<quikr_otu>.t |
| 39a0 | 78 74 20 2d 6f 20 3c 71 75 69 6b 72 5f 6f 74 75 5f 70 72 6f 6a 65 63 74 5f 6e 61 6d 65 3e 5f 77 | xt.-o.<quikr_otu_project_name>_w |
| 39c0 | 65 69 67 68 74 65 64 2e 74 78 74 00 00 20 20 20 20 62 65 74 61 5f 64 69 76 65 72 73 69 74 79 2e | eighted.txt......beta_diversity. |
| 39e0 | 70 79 20 2d 69 20 3c 71 75 69 6b 72 5f 6f 74 75 3e 2e 62 69 6f 6d 20 2d 6d 20 77 65 69 67 68 74 | py.-i.<quikr_otu>.biom.-m.weight |
| 3a00 | 65 64 5f 75 6e 69 66 72 61 63 20 2d 6f 20 62 65 74 61 5f 64 69 76 20 2d 74 20 3c 74 72 65 65 20 | ed_unifrac.-o.beta_div.-t.<tree. |
| 3a20 | 66 69 6c 65 3e 20 28 65 78 61 6d 70 6c 65 3a 20 72 64 70 37 5f 6d 61 66 66 74 2e 66 61 73 74 74 | file>.(example:.rdp7_mafft.fastt |
| 3a40 | 72 65 65 29 3e 00 20 20 20 20 00 20 20 20 20 63 6f 6e 76 65 72 74 5f 62 69 6f 6d 2e 70 79 20 2d | ree)>..........convert_biom.py.- |
| 3a60 | 69 20 3c 71 75 69 6b 72 5f 6f 74 75 5f 74 61 62 6c 65 2e 74 78 74 3e 20 2d 6f 20 3c 71 75 69 6b | i.<quikr_otu_table.txt>.-o.<quik |
| 3a80 | 72 5f 6f 74 75 3e 2e 62 69 6f 6d 20 2d 2d 62 69 6f 6d 5f 74 61 62 6c 65 5f 74 79 70 65 3d 22 6f | r_otu>.biom.--biom_table_type="o |
| 3aa0 | 74 75 20 74 61 62 6c 65 22 00 00 54 68 65 20 51 49 49 4d 45 20 70 72 6f 63 65 64 75 65 3a 00 00 | tu.table"..The.QIIME.procedue:.. |
| 3ac0 | 33 2e 20 79 6f 75 72 2d 64 65 66 69 6e 65 64 20 5c 3c 71 69 69 6d 65 5c 5f 6d 65 74 61 64 61 74 | 3..your-defined.\<qiime\_metadat |
| 3ae0 | 61 5c 5f 66 69 6c 65 2e 74 78 74 3e 00 20 20 20 67 67 5c 5f 39 34 5c 5f 6f 74 75 73 5c 5f 34 66 | a\_file.txt>....gg\_94\_otus\_4f |
| 3b00 | 65 62 32 30 31 31 2e 74 72 65 2c 20 65 74 63 2e 29 00 32 2e 20 74 68 65 20 74 72 65 65 20 6f 66 | eb2011.tre,.etc.).2..the.tree.of |
| 3b20 | 20 74 68 65 20 64 61 74 61 62 61 73 65 20 73 65 71 75 65 6e 63 65 73 20 74 68 61 74 20 77 65 72 | .the.database.sequences.that.wer |
| 3b40 | 65 20 75 73 65 64 20 28 65 2e 67 2e 20 20 64 70 37 5c 5f 6d 61 66 66 74 2e 66 61 73 74 74 72 65 | e.used.(e.g...dp7\_mafft.fasttre |
| 3b60 | 65 2c 00 31 2e 20 5c 3c 71 75 69 6b 72 5c 5f 6f 74 75 5c 5f 74 61 62 6c 65 2e 74 78 74 5c 3e 00 | e,.1..\<quikr\_otu\_table.txt\>. |
| 3b80 | 50 72 65 2d 72 65 71 75 69 73 69 74 65 73 3a 00 00 55 6e 77 65 69 67 68 74 65 64 2e 29 00 28 4e | Pre-requisites:..Unweighted.).(N |
| 3ba0 | 6f 74 65 3a 20 4f 75 72 20 63 6f 64 65 20 77 6f 72 6b 73 20 6d 75 63 68 20 62 65 74 74 65 72 20 | ote:.Our.code.works.much.better. |
| 3bc0 | 77 69 74 68 20 57 45 49 47 48 54 45 44 20 55 6e 69 66 72 61 63 20 61 73 20 6f 70 70 6f 73 65 64 | with.WEIGHTED.Unifrac.as.opposed |
| 3be0 | 20 74 6f 00 34 2d 73 74 65 70 20 51 49 49 4d 45 20 70 72 6f 63 65 64 75 72 65 20 61 66 74 65 72 | .to.4-step.QIIME.procedure.after |
| 3c00 | 20 75 73 69 6e 67 20 51 75 69 6b 72 20 74 6f 20 6f 62 74 61 69 6e 20 33 44 20 50 43 6f 41 20 67 | .using.Quikr.to.obtain.3D.PCoA.g |
| 3c20 | 72 61 70 68 73 3a 00 00 00 20 20 20 20 2d 2d 62 69 6f 6d 5f 74 61 62 6c 65 5f 74 79 70 65 3d 22 | raphs:.......--biom_table_type=" |
| 3c40 | 6f 74 75 20 74 61 62 6c 65 22 00 20 20 20 20 63 6f 6e 76 65 72 74 5f 62 69 6f 6d 2e 70 79 20 2d | otu.table".....convert_biom.py.- |
| 3c60 | 69 20 3c 71 75 69 6b 72 5f 6f 74 75 5f 74 61 62 6c 65 2e 74 78 74 3e 20 2d 6f 20 3c 71 75 69 6b | i.<quikr_otu_table.txt>.-o.<quik |
| 3c80 | 72 5f 6f 74 75 3e 2e 62 69 6f 6d 00 00 6f 75 74 70 75 74 3a 00 54 6f 20 75 73 65 20 77 69 74 68 | r_otu>.biom..output:.To.use.with |
| 3ca0 | 20 51 49 49 4d 45 2c 20 6f 6e 65 20 6d 75 73 74 20 72 75 6e 20 74 68 65 20 51 49 49 4d 45 20 63 | .QIIME,.one.must.run.the.QIIME.c |
| 3cc0 | 6f 6e 76 65 72 73 69 6f 6e 20 74 6f 6f 6c 20 6f 6e 20 6f 75 72 20 4f 54 55 20 74 61 62 6c 65 00 | onversion.tool.on.our.OTU.table. |
| 3ce0 | 00 20 20 5c 3c 6f 75 74 70 75 74 5c 5f 64 69 72 65 63 74 6f 72 79 5c 3e 2c 20 5c 3c 6f 75 74 70 | ...\<output\_directory\>,.\<outp |
| 3d00 | 75 74 5c 5f 66 69 6c 65 6e 61 6d 65 5c 3e 2c 20 61 6e 64 20 5c 3c 74 72 61 69 6e 69 6e 67 5c 5f | ut\_filename\>,.and.\<training\_ |
| 3d20 | 64 61 74 61 62 61 73 65 5f 66 69 6c 65 6e 61 6d 65 5c 3e 00 2a 20 4d 6f 64 69 66 79 20 74 68 65 | database_filename\>.*.Modify.the |
| 3d40 | 20 74 6f 70 20 6f 66 20 74 68 65 20 4d 61 74 6c 61 62 2f 4f 63 74 61 76 65 20 73 63 72 69 70 74 | .top.of.the.Matlab/Octave.script |
| 3d60 | 73 20 66 6f 72 20 5c 3c 69 6e 70 75 74 5c 5f 64 69 72 65 63 74 6f 72 79 5c 3e 2c 00 20 20 2e 66 | s.for.\<input\_directory\>,....f |
| 3d80 | 61 20 61 72 65 20 76 61 6c 69 64 20 77 68 69 6c 65 20 2e 66 6e 61 20 69 73 20 4e 4f 54 29 00 2a | a.are.valid.while..fna.is.NOT).* |
| 3da0 | 20 46 61 73 74 61 20 66 69 6c 65 73 20 6f 66 20 72 65 61 64 73 20 6d 75 73 74 20 68 61 76 65 20 | .Fasta.files.of.reads.must.have. |
| 3dc0 | 61 20 73 75 66 66 69 78 20 74 68 61 74 20 73 74 61 72 74 73 20 77 69 74 68 20 2e 66 61 20 28 65 | a.suffix.that.starts.with..fa.(e |
| 3de0 | 2e 67 2e 3a 20 2e 66 61 73 74 61 20 61 6e 64 00 20 20 66 61 73 74 61 20 66 69 6c 65 20 70 72 65 | .g.:..fasta.and...fasta.file.pre |
| 3e00 | 66 69 78 20 6e 61 6d 65 73 00 2a 20 4e 6f 74 65 3a 20 57 68 65 6e 20 6d 61 6b 69 6e 67 20 79 6f | fix.names.*.Note:.When.making.yo |
| 3e20 | 75 72 20 51 49 49 4d 45 20 4d 65 74 61 64 61 74 61 20 66 69 6c 65 2c 20 74 68 65 20 73 61 6d 70 | ur.QIIME.Metadata.file,.the.samp |
| 3e40 | 6c 65 20 69 64 27 73 20 6d 75 73 74 20 6d 61 74 63 68 20 74 68 65 00 20 20 64 69 72 65 63 74 6f | le.id's.must.match.the...directo |
| 3e60 | 72 79 29 00 20 20 68 69 64 64 65 6e 20 66 69 6c 65 73 20 74 68 61 74 20 74 68 65 20 6f 70 65 72 | ry)...hidden.files.that.the.oper |
| 3e80 | 61 74 69 6e 67 20 73 79 73 74 65 6d 20 6d 61 79 20 67 65 6e 65 72 61 74 65 2c 20 61 72 65 20 61 | ating.system.may.generate,.are.a |
| 3ea0 | 6c 6c 6f 77 65 64 20 69 6e 20 74 68 61 74 00 20 20 69 6e 74 6f 20 6f 6e 65 20 64 69 72 65 63 74 | llowed.in.that...into.one.direct |
| 3ec0 | 6f 72 79 20 77 69 74 68 6f 75 74 20 61 6e 79 20 6f 74 68 65 72 20 66 69 6c 65 20 69 6e 20 74 68 | ory.without.any.other.file.in.th |
| 3ee0 | 61 74 20 64 69 72 65 63 74 6f 72 79 20 28 66 6f 72 20 65 78 61 6d 70 6c 65 2c 20 6e 6f 00 2a 20 | at.directory.(for.example,.no.*. |
| 3f00 | 50 6c 65 61 73 65 20 6e 61 6d 65 20 66 61 73 74 61 20 66 69 6c 65 73 20 6f 66 20 73 61 6d 70 6c | Please.name.fasta.files.of.sampl |
| 3f20 | 65 20 72 65 61 64 73 20 77 69 74 68 20 3c 73 61 6d 70 6c 65 20 69 64 3e 2e 66 61 3c 2a 3e 20 61 | e.reads.with.<sample.id>.fa<*>.a |
| 3f40 | 6e 64 20 70 6c 61 63 65 20 74 68 65 6d 00 55 73 61 67 65 20 74 69 70 73 3a 00 00 23 23 23 20 55 | nd.place.them.Usage.tips:..###.U |
| 3f60 | 73 69 6e 67 20 4d 75 6c 74 69 66 61 73 74 61 32 6f 74 75 2e 6d 20 23 23 23 00 20 20 20 20 00 20 | sing.Multifasta2otu.m.###....... |
| 3f80 | 20 20 20 6e 61 6d 65 73 61 6e 64 70 72 6f 70 6f 72 74 69 6f 6e 73 3d 7b 6e 61 6d 65 73 63 65 6c | ...namesandproportions={namescel |
| 3fa0 | 6c 7b 3a 7d 3b 20 70 72 6f 70 6f 72 74 69 6f 6e 73 63 65 6c 6c 7b 3a 7d 7d 3b 00 00 74 68 65 69 | l{:};.proportionscell{:}};..thei |
| 3fc0 | 72 20 63 6f 6e 63 65 6e 74 72 61 74 69 6f 6e 73 20 28 69 6e 20 74 68 65 20 66 69 72 73 74 20 61 | r.concentrations.(in.the.first.a |
| 3fe0 | 6e 64 20 73 65 63 6f 6e 64 20 63 6f 6c 75 6d 6e 73 20 72 65 73 70 65 63 74 69 76 65 6c 79 29 00 | nd.second.columns.respectively). |
 |
index : quikr.git | |
| Quikr - a bio classifier based on NNLS |
| aboutsummaryrefslogtreecommitdiff |
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