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all: nbc python
install:
@echo installing executable files to ${DESTDIR}${PREFIX}/bin
@mkdir -p ${DESTDIR}${PREFIX}/bin
@cp -vf src/nbc/probabilities-by-read ${DESTDIR}${PREFIX}/bin/probabilities-by-read
@cp -vf src/nbc/count ${DESTDIR}${PREFIX}/bin/count-kmers
@cp -vf src/python/quikr ${DESTDIR}${PREFIX}/bin/quikr
@cp -vf src/python/quikr_train ${DESTDIR}${PREFIX}/bin/quikr_train
@cp -vf src/python/multifasta_to_otu ${DESTDIR}${PREFIX}/bin/multifasta_to_otu
@cp -vf src/python/generate_kmers ${DESTDIR}${PREFIX}/bin/generate_kmers
chmod -v 755 ${DESTDIR}${PREFIX}/bin/probabilities-by-read
chmod -v 755 ${DESTDIR}${PREFIX}/bin/count-kmers
chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr
chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr_train
chmod -v 755 ${DESTDIR}${PREFIX}/bin/multifasta_to_otu
chmod -v 755 ${DESTDIR}${PREFIX}/bin/generate_kmers
@cd src/python; python setup.py install
nbc:
@echo "building nbc"
@cd src/nbc; make
python:
@echo "configuring python"
@cd src/python; python setup.py build
clean:
@echo "cleaning up"
@cd src/python; rm build -Rvf
@cd src/nbc; make clean
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