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PREFIX = "/usr/"
all: nbc c
install:
@echo installing executable files to ${DESTDIR}${PREFIX}/bin
@mkdir -p ${DESTDIR}${PREFIX}/bin
@cp -vf src/nbc/probabilities-by-read ${DESTDIR}${PREFIX}/bin/probabilities-by-read
@cp -vf src/nbc/count ${DESTDIR}${PREFIX}/bin/count-kmers
@cp -vf src/c/quikr_train ${DESTDIR}${PREFIX}/bin/quikr_train
@cp -vf src/c/quikr ${DESTDIR}${PREFIX}/bin/quikr
@cp -vf src/c/multifasta_to_otu ${DESTDIR}${PREFIX}/bin/multifasta_to_otu
@cp -vf src/python/generate_kmers ${DESTDIR}${PREFIX}/bin/generate_kmers
chmod -v 755 ${DESTDIR}${PREFIX}/bin/probabilities-by-read
chmod -v 755 ${DESTDIR}${PREFIX}/bin/count-kmers
chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr
chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr_train
chmod -v 755 ${DESTDIR}${PREFIX}/bin/multifasta_to_otu
chmod -v 755 ${DESTDIR}${PREFIX}/bin/generate_kmers
@cp -vf src/c/quikr.1 ${DESTDIR}${PREFIX}/share/man/man1/quikr.1
@cp -vf src/c/quikr_train.1 ${DESTDIR}${PREFIX}/share/man/man1/quikr_train.1
@cp -vf src/c/multifasta_to_otu.1 ${DESTDIR}${PREFIX}/share/man/man1/multifasta_to_otu.1
nbc:
@echo "building nbc"
@cd src/nbc; make
c:
@echo "building c"
@cd src/c; make
python:
@echo "configuring python"
@cd src/python; python setup.py build
install_python:
@cd src/python; python setup.py install
@cp -vf src/nbc/probabilities-by-read ${DESTDIR}${PREFIX}/bin/probabilities-by-read
@cp -vf src/nbc/count ${DESTDIR}${PREFIX}/bin/count-kmers
@cp -vf src/python/quikr ${DESTDIR}${PREFIX}/bin/quikr.py
@cp -vf src/python/quikr_train ${DESTDIR}${PREFIX}/bin/quikr_train.py
@cp -vf src/python/multifasta_to_otu ${DESTDIR}${PREFIX}/bin/multifasta_to_otu.py
@cp -vf src/python/generate_kmers ${DESTDIR}${PREFIX}/bin/generate_kmers
chmod -v 755 ${DESTDIR}${PREFIX}/bin/probabilities-by-read
chmod -v 755 ${DESTDIR}${PREFIX}/bin/count-kmers
chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr.py
chmod -v 755 ${DESTDIR}${PREFIX}/bin/quikr_train.py
chmod -v 755 ${DESTDIR}${PREFIX}/bin/multifasta_to_otu.py
chmod -v 755 ${DESTDIR}${PREFIX}/bin/generate_kmers
clean:
@echo "cleaning up"
@cd src/python; rm build -Rvf
@cd src/nbc; make clean
@cd src/c; make clean
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