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AgeCommit message (Expand)Author
2013-11-07add quikr.hCalvin Morrison
2013-11-07remove debuggingCalvin Morrison
2013-11-07update to work with kmer rarityCalvin Morrison
2013-11-07 don't cast the return of callocCalvin Morrison
2013-11-07fix memleakCalvin Morrison
2013-10-31say failname on failCalvin Morrison
2013-10-31fix variableCalvin Morrison
2013-10-31remove all references to sensing-fastaCalvin Morrison
2013-10-31add test.faCalvin Morrison
2013-10-31inital test system in placeCalvin Morrison
2013-10-31finish up removing OCaml Code and general code refactoringCalvin Morrison
2013-10-31fix memsetCalvin Morrison
2013-10-31formatting changes for quikrCalvin Morrison
2013-10-31return 0 instead of exit_failure in count_sequences, and remove the newline f...Calvin Morrison
2013-10-31exit if no sequencesCalvin Morrison
2013-10-31fix a bug so we only read when the length is greater han the kmerCalvin Morrison
2013-10-29remove the fasta file requirement for multifasta, and no longer parse headers...Calvin Morrison
2013-10-29initial commit of multifasta_to_otu.c working with new formatCalvin Morrison
2013-10-29update tpyes for quikr_train.cCalvin Morrison
2013-10-29update types for quikr_functionsCalvin Morrison
2013-10-29update types and check mallocCalvin Morrison
2013-10-29append variables in makefile to reduce redundancyCalvin Morrison
2013-10-29use type in memset, add +1 to our matrix widthCalvin Morrison
2013-10-29update errors from load_sensing_matrixCalvin Morrison
2013-10-29update quikr to work with internally parsed sensing matrixCalvin Morrison
2013-10-29update headerCalvin Morrison
2013-10-29fix memset in quikr_train as weelCalvin Morrison
2013-10-29Fix a nasty bug in kmer-counting codeCalvin Morrison
2013-10-28update kmer utilsCalvin Morrison
2013-10-28New sensing matrix formatCalvin Morrison
2013-10-28update Makefile to be more sane and use targets correctlyCalvin Morrison
2013-10-28Update quikr_functions to read our sensing formatCalvin Morrison
2013-10-18add kmercounting code from dna-utils. update our make file to support debuggi...Calvin Morrison
2013-09-05last fixes for 1.0.4v1.0.4Calvin Morrison
2013-09-05bump to version v1.0.4Calvin Morrison
2013-09-05Remove debugging versionCalvin Morrison
2013-08-29parse -h and --help and print out the help messageCalvin Morrison
2013-08-16Merge branch 'master' of github.com:mutantturkey/quikrCalvin Morrison
2013-08-16remove unused caseCalvin Morrison
2013-06-13use readdir and #omp criticalv1.0.3Calvin
2013-06-12fix caseCalvin
2013-06-12add --version and -VCalvin
2013-06-12use larger size for count_commmand, remove extra quotes, and fix a broken che...Calvin Morrison
2013-06-11remove fileCalvin Morrison
2013-06-11remove extra wordCalvin
2013-06-11updated functions with longCalvin
2013-06-11use int64_t for NNLS to avoid overflow issuesCalvin
2013-06-11small edits to man pageCalvin
2013-06-11use longs instead of ints, fix a mistake in the --helpCalvin
2013-06-10finish gzip decoding, YOU MUST retrain your apiCalvin
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