quikr.git - Quikr - a bio classifier based on NNLS

Age	Commit message (Collapse)	Author
2014-06-18	add force flag for filename	Calvin Morrison

2014-04-29	fix make clean; push changes to fix > bug	Calvin Morrison

2013-10-31	exit if no sequences	Calvin Morrison

2013-10-29	update tpyes for quikr_train.c	Calvin Morrison

2013-10-29	fix memset in quikr_train as weel	Calvin Morrison

2013-10-29	Fix a nasty bug in kmer-counting code	Calvin Morrison
	Memset of course does not deal properly with the unsigned long long type so we need to compensate by doing sizeof(unsigned long long) * width to fix the issue
2013-10-28	New sensing matrix format	Calvin Morrison
	quikr_train now has a new format that should allow for a more sane approach in terms of usability. headers are now packed into the format, and counts, not probabilities are included as each row the header looks like quikr version of format sequences kmer >header 2 4 12 22 ... n-mers >header2 ....
2013-08-29	parse -h and --help and print out the help message	Calvin Morrison

2013-06-12	add --version and -V	Calvin

2013-06-11	remove extra word	Calvin

2013-06-10	finish gzip decoding, YOU MUST retrain your api	Calvin

2013-06-10	remove unused variable	Calvin

2013-06-06	fixed a malloc error, and fixed some strings	Calvin

2013-05-20	updated documentation strings, add man page to be installed globally	Calvin

2013-05-15	add some error checking	Calvin

2013-05-15	add -d flag for debugging so verbose doesn't take longer, use generate_kmers ↵	Calvin
	instead of a hacky awk
2013-05-14	release1.0	Calvin